Gene name: YBP1
Reference locus (S288C): YBR216C
Gene biotype: protein_coding
Description: YAP1-binding protein 1; Protein involved in cellular response to oxidative stress; required for oxidation of specific cysteine residues of transcription factor Yap1p, resulting in nuclear localization of Yap1p in response to stress; YBP1 has a paralog, YBP2, that arose from the whole genome duplication
Top 10 interactors (score): YAP1 (0.994); HYR1 (0.964); TSA1 (0.81); URE2 (0.672); CRM1 (0.58); TRX1 (0.575); TRX2 (0.574); NUP116 (0.566); SKN7 (0.535); APD1 (0.535); PET8 (0.483); ATE1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:639882-641906:- | gene-YBR216C_AKU4011 | rna-NM_001178564.3_AKU4011 | cds-NP_009775.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:10803-12827:- | gene-YBR216C_BG1 | rna-NM_001178564.3_BG1 | cds-NP_009775.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:641037-643061:- | gene-YBR216C_Bruggeman | rna-NM_001178564.3_Bruggeman | cds-NP_009775.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:644241-646265:- | gene-YBR216C_CAT1 | rna-NM_001178564.3_CAT1 | cds-NP_009775.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:631414-633438:- | gene-YBR216C_CBS1585 | rna-NM_001178564.3_CBS1585 | cds-NP_009775.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:637839-639863:- | gene-YBR216C_CBS436 | rna-NM_001178564.3_CBS436 | cds-NP_009775.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:726391-728415:- | gene-YBR216C_CBS6412 | rna-NM_001178564.3_CBS6412 | cds-NP_009775.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:637452-639476:- | gene-YBR216C_CBS6413 | rna-NM_001178564.3_CBS6413 | cds-NP_009775.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:649325-651350:- | gene-YBR216C_CENPK1137D | rna-NM_001178564.3_CENPK1137D | cds-NP_009775.3_CENPK1137D | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:763127-765151:- | gene-YBR216C_EthanolRed | rna-NM_001178564.3_EthanolRed | cds-NP_009775.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:656234-658258:- | gene-YBR216C_FaliES1 | rna-NM_001178564.3_FaliES1 | cds-NP_009775.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000326.1:10607-12631:- | gene-YBR216C_JAY291 | rna-NM_001178564.3_JAY291 | cds-NP_009775.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:643050-645074:- | gene-YBR216C_MUCL30387 | rna-NM_001178564.3_MUCL30387 | cds-NP_009775.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:660130-662154:- | gene-YBR216C_MUCL30388 | rna-NM_001178564.3_MUCL30388 | cds-NP_009775.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:629766-631790:- | gene-YBR216C_MUCL39482 | rna-NM_001178564.3_MUCL39482 | cds-NP_009775.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:639248-641272:- | gene-YBR216C_MUCL42920 | rna-NM_001178564.3_MUCL42920 | cds-NP_009775.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:655373-657397:- | gene-YBR216C_NCIM3186 | rna-NM_001178564.3_NCIM3186 | cds-NP_009775.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:631628-633652:- | gene-YBR216C_NCYC1407 | rna-NM_001178564.3_NCYC1407 | cds-NP_009775.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:654745-656769:- | gene-YBR216C_PE2H3 | rna-NM_001178564.3_PE2H3 | cds-NP_009775.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:652421-654445:- | gene-YBR216C_PE2H4 | rna-NM_001178564.3_PE2H4 | cds-NP_009775.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:655576-657600:- | gene-YBR216C_S288C | rna-NM_001178564.3_S288C | cds-NP_009775.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:10700-12724:- | gene-YBR216C_SA1 | rna-NM_001178564.3_SA1 | cds-NP_009775.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:655244-657268:- | gene-YBR216C_ThermosaccDry | rna-NM_001178564.3_ThermosaccDry | cds-NP_009775.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:635416-637440:- | gene-YBR216C_VR1 | rna-NM_001178564.3_VR1 | cds-NP_009775.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:628111-630135:- | gene-YBR216C_ZTW1 | rna-NM_001178564.3_ZTW1 | cds-NP_009775.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:672103-674115:- | gene-YBR216C_Sparadoxus | rna-NM_001178564.3_Sparadoxus | cds-NP_009775.3_Sparadoxus | 87.7 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |