Gene name: YBL100W-B
Reference locus (S288C): YBL100W-B
Gene biotype: protein_coding
Description: Transposon Ty2-B Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 99.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000051.1:1-501:- | gene-YBL100W-B_CAT1 | rna-NM_001180050.2_CAT1 | cds-NP_009450.1_CAT1 | 9.3 | 9.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000092.1:1-928:- | gene-YBL100W-B_FaliES1 | rna-NM_001180050.2_FaliES1 | cds-NP_009450.1_FaliES1 | 16.9 | 17.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:306816-312129:+ | gene-YBL100W-B_PE2H3 | rna-NM_001180050.2_PE2H3 | cds-NP_009450.1_PE2H3 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:295368-300681:+ | gene-YBL100W-B_PE2H4 | rna-NM_001180050.2_PE2H4 | cds-NP_009450.1_PE2H4 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:29935-35248:+ | gene-YBL100W-B_S288C | rna-NM_001180050.2_S288C | cds-NP_009450.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000231.1:1-1280:+ | gene-YBL100W-B_VR1 | rna-NM_001180050.2_VR1 | cds-NP_009450.1_VR1 | 23.6 | 24.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |