YBL100W-B (YBL100W-B)

Gene profile

Gene name: YBL100W-B
Reference locus (S288C): YBL100W-B
Gene biotype: protein_coding

Description: Transposon Ty2-B Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 99.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000051.1:1-501:- gene-YBL100W-B_CAT1 rna-NM_001180050.2_CAT1 cds-NP_009450.1_CAT1 9.3 9.4 Mismatch 1 1 0 False False True False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000092.1:1-928:- gene-YBL100W-B_FaliES1 rna-NM_001180050.2_FaliES1 cds-NP_009450.1_FaliES1 16.9 17.4 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:306816-312129:+ gene-YBL100W-B_PE2H3 rna-NM_001180050.2_PE2H3 cds-NP_009450.1_PE2H3 99.0 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:295368-300681:+ gene-YBL100W-B_PE2H4 rna-NM_001180050.2_PE2H4 cds-NP_009450.1_PE2H4 99.0 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:29935-35248:+ gene-YBL100W-B_S288C rna-NM_001180050.2_S288C cds-NP_009450.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000231.1:1-1280:+ gene-YBL100W-B_VR1 rna-NM_001180050.2_VR1 cds-NP_009450.1_VR1 23.6 24.0 Verified 1 1 0 False False True False False

Additional files