YBL100W-A (YBL100W-A)

Gene profile

Gene name: YBL100W-A
Reference locus (S288C): YBL100W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): FMP23 (0.57); VHT1 (0.501); AAD10 (0.451); MCK1 (0.411)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:566353-567670:- gene-YBL100W-A_NCIM3186 rna-NM_001180049.1_NCIM3186 cds-NP_009451.1_NCIM3186 84.8 100.0 Mismatch 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:306816-308132:+ gene-YBL100W-A_PE2H3 rna-NM_001180049.1_PE2H3 cds-NP_009451.1_PE2H3 99.0 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:295368-296684:+ gene-YBL100W-A_PE2H4 rna-NM_001180049.1_PE2H4 cds-NP_009451.1_PE2H4 99.0 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:29935-31251:+ gene-YBL100W-A_S288C rna-NM_001180049.1_S288C cds-NP_009451.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files