Gene name: YBL100W-A
Reference locus (S288C): YBL100W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): FMP23 (0.57); VHT1 (0.501); AAD10 (0.451); MCK1 (0.411)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:566353-567670:- | gene-YBL100W-A_NCIM3186 | rna-NM_001180049.1_NCIM3186 | cds-NP_009451.1_NCIM3186 | 84.8 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:306816-308132:+ | gene-YBL100W-A_PE2H3 | rna-NM_001180049.1_PE2H3 | cds-NP_009451.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:295368-296684:+ | gene-YBL100W-A_PE2H4 | rna-NM_001180049.1_PE2H4 | cds-NP_009451.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:29935-31251:+ | gene-YBL100W-A_S288C | rna-NM_001180049.1_S288C | cds-NP_009451.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |