Gene name: YBL055C
Reference locus (S288C): YBL055C
Gene biotype: protein_coding
Description: 3'-5'-exodeoxyribonuclease; Deoxyribonuclease Tat-D; 3'-->5' exonuclease and endonuclease with a possible role in apoptosis; has similarity to mammalian and C. elegans apoptotic nucleases
Top 10 interactors (score): NUC1 (0.804); NMA111 (0.777); TMA19 (0.763); UBX3 (0.745); OXR1 (0.717); TRM7 (0.69); NDI1 (0.686); UBC11 (0.686); SPE4 (0.634); ALE1 (0.593); SPE3 (0.592); AQY1 (0.589); FAP7 (0.534); MRPL23 (0.525); DIM1 (0.51); PSO2 (0.493); PHO90 (0.487); MCA1 (0.483); GRX5 (0.468); SAS3 (0.457)
Homologues (species, bitscore): TATDN1 (Homo sapiens, 188.0); Tatdn1 (Mus musculus, 171.4); TATDN1 (Danio rerio, 155.6); tatdn1 (Xenopus tropicalis, 195.3); DmelCG3358 (Drosophila melanogaster, 203.0); crn-2 (Caenorhabditis elegans, 78.2); AT3G52390 (Arabidopsis thaliana, 203.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:109154-110410:- | gene-YBL055C_AKU4011 | rna-NM_001178295.1_AKU4011 | cds-NP_009498.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:100008-101264:- | gene-YBL055C_BG1 | rna-NM_001178295.1_BG1 | cds-NP_009498.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:109767-111023:- | gene-YBL055C_Bruggeman | rna-NM_001178295.1_Bruggeman | cds-NP_009498.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:112406-113662:- | gene-YBL055C_CAT1 | rna-NM_001178295.1_CAT1 | cds-NP_009498.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:101721-102977:- | gene-YBL055C_CBS1585 | rna-NM_001178295.1_CBS1585 | cds-NP_009498.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:110229-111485:- | gene-YBL055C_CBS436 | rna-NM_001178295.1_CBS436 | cds-NP_009498.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:100226-101482:- | gene-YBL055C_CBS6412 | rna-NM_001178295.1_CBS6412 | cds-NP_009498.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:107299-108555:- | gene-YBL055C_CBS6413 | rna-NM_001178295.1_CBS6413 | cds-NP_009498.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:109340-110596:- | gene-YBL055C_CENPK1137D | rna-NM_001178295.1_CENPK1137D | cds-NP_009498.1_CENPK1137D | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:123153-124409:- | gene-YBL055C_EthanolRed | rna-NM_001178295.1_EthanolRed | cds-NP_009498.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:124006-125262:- | gene-YBL055C_FaliES1 | rna-NM_001178295.1_FaliES1 | cds-NP_009498.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:26622-27878:- | gene-YBL055C_JAY291 | rna-NM_001178295.1_JAY291 | cds-NP_009498.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:109140-110396:- | gene-YBL055C_MUCL30387 | rna-NM_001178295.1_MUCL30387 | cds-NP_009498.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:110417-111673:- | gene-YBL055C_MUCL30388 | rna-NM_001178295.1_MUCL30388 | cds-NP_009498.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:101901-103157:- | gene-YBL055C_MUCL39482 | rna-NM_001178295.1_MUCL39482 | cds-NP_009498.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:108737-109993:- | gene-YBL055C_MUCL42920 | rna-NM_001178295.1_MUCL42920 | cds-NP_009498.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:115370-116626:- | gene-YBL055C_NCIM3186 | rna-NM_001178295.1_NCIM3186 | cds-NP_009498.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:103044-104300:- | gene-YBL055C_NCYC1407 | rna-NM_001178295.1_NCYC1407 | cds-NP_009498.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:109298-110554:- | gene-YBL055C_PE2H3 | rna-NM_001178295.1_PE2H3 | cds-NP_009498.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:106942-108198:- | gene-YBL055C_PE2H4 | rna-NM_001178295.1_PE2H4 | cds-NP_009498.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:115573-116829:- | gene-YBL055C_S288C | rna-NM_001178295.1_S288C | cds-NP_009498.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:153-1409:- | gene-YBL055C_SA1 | rna-NM_001178295.1_SA1 | cds-NP_009498.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:123967-125223:- | gene-YBL055C_ThermosaccDry | rna-NM_001178295.1_ThermosaccDry | cds-NP_009498.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:106134-107390:- | gene-YBL055C_VR1 | rna-NM_001178295.1_VR1 | cds-NP_009498.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:100678-101934:- | gene-YBL055C_ZTW1 | rna-NM_001178295.1_ZTW1 | cds-NP_009498.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:135396-136652:- | gene-YBL055C_Sparadoxus | rna-NM_001178295.1_Sparadoxus | cds-NP_009498.1_Sparadoxus | 87.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |