Gene name: YBL028C
Reference locus (S288C): YBL028C
Gene biotype: protein_coding
Description: UPF0642 protein YBL028C; Protein of unknown function that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; predicted to be involved in ribosome biogenesis
Top 10 interactors (score): CGR1 (0.998); NOP15 (0.998); RRS1 (0.997); NIP7 (0.997); CIC1 (0.997); RLP24 (0.997); RPF2 (0.997); EBP2 (0.996); BRX1 (0.996); MRT4 (0.996); NSA2 (0.996); RLP7 (0.996); RPF1 (0.995); RRP1 (0.995); MAK16 (0.992); ARX1 (0.992); NOC2 (0.991); NUG1 (0.991); SPB1 (0.991); NMD3 (0.991)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:161131-161451:- | gene-YBL028C_AKU4011 | rna-NM_001178268.1_AKU4011 | cds-NP_009525.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:151960-152280:- | gene-YBL028C_BG1 | rna-NM_001178268.1_BG1 | cds-NP_009525.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:161724-162044:- | gene-YBL028C_Bruggeman | rna-NM_001178268.1_Bruggeman | cds-NP_009525.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:164334-164654:- | gene-YBL028C_CAT1 | rna-NM_001178268.1_CAT1 | cds-NP_009525.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:153686-154006:- | gene-YBL028C_CBS1585 | rna-NM_001178268.1_CBS1585 | cds-NP_009525.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:162165-162485:- | gene-YBL028C_CBS436 | rna-NM_001178268.1_CBS436 | cds-NP_009525.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:252465-252785:- | gene-YBL028C_CBS6412 | rna-NM_001178268.1_CBS6412 | cds-NP_009525.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:159256-159576:- | gene-YBL028C_CBS6413 | rna-NM_001178268.1_CBS6413 | cds-NP_009525.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:161283-161603:- | gene-YBL028C_CENPK1137D | rna-NM_001178268.1_CENPK1137D | cds-NP_009525.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:288672-288992:- | gene-YBL028C_EthanolRed | rna-NM_001178268.1_EthanolRed | cds-NP_009525.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:175939-176259:- | gene-YBL028C_FaliES1 | rna-NM_001178268.1_FaliES1 | cds-NP_009525.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:1613-1933:- | gene-YBL028C_JAY291 | rna-NM_001178268.1_JAY291 | cds-NP_009525.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:161332-161652:- | gene-YBL028C_MUCL30387 | rna-NM_001178268.1_MUCL30387 | cds-NP_009525.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:162373-162693:- | gene-YBL028C_MUCL30388 | rna-NM_001178268.1_MUCL30388 | cds-NP_009525.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:153871-154191:- | gene-YBL028C_MUCL39482 | rna-NM_001178268.1_MUCL39482 | cds-NP_009525.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:160651-160971:- | gene-YBL028C_MUCL42920 | rna-NM_001178268.1_MUCL42920 | cds-NP_009525.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:167315-167635:- | gene-YBL028C_NCIM3186 | rna-NM_001178268.1_NCIM3186 | cds-NP_009525.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:155019-155339:- | gene-YBL028C_NCYC1407 | rna-NM_001178268.1_NCYC1407 | cds-NP_009525.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:161249-161569:- | gene-YBL028C_PE2H3 | rna-NM_001178268.1_PE2H3 | cds-NP_009525.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:158893-159213:- | gene-YBL028C_PE2H4 | rna-NM_001178268.1_PE2H4 | cds-NP_009525.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:167518-167838:- | gene-YBL028C_S288C | rna-NM_001178268.1_S288C | cds-NP_009525.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:52172-52492:- | gene-YBL028C_SA1 | rna-NM_001178268.1_SA1 | cds-NP_009525.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:175893-176213:- | gene-YBL028C_ThermosaccDry | rna-NM_001178268.1_ThermosaccDry | cds-NP_009525.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:158061-158381:- | gene-YBL028C_VR1 | rna-NM_001178268.1_VR1 | cds-NP_009525.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:152615-152935:- | gene-YBL028C_ZTW1 | rna-NM_001178268.1_ZTW1 | cds-NP_009525.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:187553-187873:- | gene-YBL028C_Sparadoxus | rna-NM_001178268.1_Sparadoxus | cds-NP_009525.1_Sparadoxus | 93.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |