YBL005W-B (YBL005W-B)

Gene profile

Gene name: YBL005W-B
Reference locus (S288C): YBL005W-B
Gene biotype: protein_coding

Description: Transposon Ty1-BL Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): YKL033W-A (0.941); CSS1 (0.892); GIN4 (0.564); HOS2 (0.421); SIR2 (0.404)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 97.1)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000004.1:27-880:+ gene-YBL005W-B_AKU4011 rna-NM_001180048.2_AKU4011 cds-NP_009549.1_AKU4011 16.1 16.2 Mismatch 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000232.1:1-1500:- gene-YBL005W-B_Bruggeman rna-NM_001180048.2_Bruggeman cds-NP_009549.1_Bruggeman 28.4 28.4 Verified 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000389.1:1-1386:+ gene-YBL005W-B_CAT1 rna-NM_001180048.2_CAT1 cds-NP_009549.1_CAT1 25.8 26.3 Mismatch 1 1 0 False False True False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000056.1:1-854:- gene-YBL005W-B_CBS1585 rna-NM_001180048.2_CBS1585 cds-NP_009549.1_CBS1585 16.1 16.2 Mismatch 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000039.1:261-5525:- gene-YBL005W-B_CBS6412 rna-NM_001180048.2_CBS6412 cds-NP_009549.1_CBS6412 99.7 99.9 Unannotated 1 1 0 False False False True False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000004.1:1-4017:- gene-YBL005W-B_EthanolRed rna-NM_001180048.2_EthanolRed cds-NP_009549.1_EthanolRed 76.1 76.2 Verified 1 1 0 False False False True False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000087.1:1-1385:- gene-YBL005W-B_FaliES1 rna-NM_001180048.2_FaliES1 cds-NP_009549.1_FaliES1 26.2 26.2 Mismatch 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000134.1:1-1400:- gene-YBL005W-B_MUCL30387 rna-NM_001180048.2_MUCL30387 cds-NP_009549.1_MUCL30387 26.4 26.5 Mismatch 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000050.1:1-1578:- gene-YBL005W-B_MUCL30388 rna-NM_001180048.2_MUCL30388 cds-NP_009549.1_MUCL30388 29.8 29.9 Mismatch 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000057.1:198-1817:+ gene-YBL005W-B_MUCL42920 rna-NM_001180048.2_MUCL42920 cds-NP_009549.1_MUCL42920 30.6 30.7 Mismatch 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:221127-226395:+ gene-YBL005W-B_NCIM3186 rna-NM_001180048.2_NCIM3186 cds-NP_009549.1_NCIM3186 99.9 100.0 Verified 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000108.1:1-962:- gene-YBL005W-B_NCYC1407 rna-NM_001180048.2_NCYC1407 cds-NP_009549.1_NCYC1407 18.2 18.2 Mismatch 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:221330-226598:+ gene-YBL005W-B_S288C rna-NM_001180048.2_S288C cds-NP_009549.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000009.1:1-854:- gene-YBL005W-B_ThermosaccDry rna-NM_001180048.2_ThermosaccDry cds-NP_009549.1_ThermosaccDry 16.1 16.2 Mismatch 1 1 0 False False False True False

Additional files