Gene name: YBL005W-A
Reference locus (S288C): YBL005W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YGR109W-A (0.714); FMP23 (0.562); VHT1 (0.487); RPN11 (0.463); L9001 (0.453); AAD10 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000004.1:27-880:+ | gene-YBL005W-A_AKU4011 | rna-NM_001180047.1_AKU4011 | cds-NP_009550.1_AKU4011 | 64.3 | 64.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000232.1:256-1500:- | gene-YBL005W-A_Bruggeman | rna-NM_001180047.1_Bruggeman | cds-NP_009550.1_Bruggeman | 93.9 | 94.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000056.1:1-854:- | gene-YBL005W-A_CBS1585 | rna-NM_001180047.1_CBS1585 | cds-NP_009550.1_CBS1585 | 64.3 | 64.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000039.1:4207-5525:- | gene-YBL005W-A_CBS6412 | rna-NM_001180047.1_CBS6412 | cds-NP_009550.1_CBS6412 | 99.3 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000006.1:4010-5332:- | gene-YBL005W-A_CBS6413 | rna-NM_001180047.1_CBS6413 | cds-NP_009550.1_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000004.1:2695-4017:- | gene-YBL005W-A_EthanolRed | rna-NM_001180047.1_EthanolRed | cds-NP_009550.1_EthanolRed | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000087.1:63-1385:- | gene-YBL005W-A_FaliES1 | rna-NM_001180047.1_FaliES1 | cds-NP_009550.1_FaliES1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000134.1:256-1400:- | gene-YBL005W-A_MUCL30387 | rna-NM_001180047.1_MUCL30387 | cds-NP_009550.1_MUCL30387 | 86.1 | 86.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000050.1:256-1578:- | gene-YBL005W-A_MUCL30388 | rna-NM_001180047.1_MUCL30388 | cds-NP_009550.1_MUCL30388 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:929838-931164:- | gene-YBL005W-A_MUCL39482 | rna-NM_001180047.1_MUCL39482 | cds-NP_009550.1_MUCL39482 | 76.1 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000057.1:198-1520:+ | gene-YBL005W-A_MUCL42920 | rna-NM_001180047.1_MUCL42920 | cds-NP_009550.1_MUCL42920 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:221127-222449:+ | gene-YBL005W-A_NCIM3186 | rna-NM_001180047.1_NCIM3186 | cds-NP_009550.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000108.1:1-962:- | gene-YBL005W-A_NCYC1407 | rna-NM_001180047.1_NCYC1407 | cds-NP_009550.1_NCYC1407 | 72.5 | 72.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:221330-222652:+ | gene-YBL005W-A_S288C | rna-NM_001180047.1_S288C | cds-NP_009550.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000009.1:1-854:- | gene-YBL005W-A_ThermosaccDry | rna-NM_001180047.1_ThermosaccDry | cds-NP_009550.1_ThermosaccDry | 64.3 | 64.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000234.1:1-234:+ | gene-YBL005W-A_VR1 | rna-NM_001180047.1_VR1 | cds-NP_009550.1_VR1 | 17.6 | 17.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |