Gene name: YAR1
Reference locus (S288C): YPL239W
Gene biotype: protein_coding
Description: Ankyrin repeat-containing protein YAR1; Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone; prevents aggregation of Rps3p in the cytoplasm, associates with nascent Rps3p during its translation in the cytoplasm and delivers it to the 90S in the nucleus; required for 40S ribosomal subunit export, biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock
Top 10 interactors (score): RPS3 (0.999); LTV1 (0.987); TSR2 (0.959); RRB1 (0.959); ENP1 (0.892); RPS26A (0.873); SQT1 (0.865); SFM1 (0.829); SUI3 (0.798); ACL4 (0.772); YGR283C (0.75); FAP7 (0.747); RPS20 (0.728); RPL5 (0.728); RPS15 (0.717); RPL11A (0.714); RPL10 (0.703); RPL11B (0.701); YGR210C (0.699); RTP1 (0.699)
Homologues (species, bitscore): ANKRD44 (Homo sapiens, 54.3); Sowahc (Mus musculus, 56.6); ank2a (Danio rerio, 56.2); ENSXETP00000051224 (Xenopus tropicalis, 56.6); nompC (Drosophila melanogaster, 59.3); fem-1 (Caenorhabditis elegans, 50.8); AT5G12320 (Arabidopsis thaliana, 58.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:77230-77832:+ | gene-YPL239W_AKU4011 | rna-NM_001184053.1_AKU4011 | cds-NP_015085.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:283176-283775:+ | gene-YPL239W_BG1 | rna-NM_001184053.1_BG1 | cds-NP_015085.1_BG1 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:102441-103040:+ | gene-YPL239W_Bruggeman | rna-NM_001184053.1_Bruggeman | cds-NP_015085.1_Bruggeman | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:99482-100081:+ | gene-YPL239W_CAT1 | rna-NM_001184053.1_CAT1 | cds-NP_015085.1_CAT1 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:81544-82146:+ | gene-YPL239W_CBS1585 | rna-NM_001184053.1_CBS1585 | cds-NP_015085.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:95968-96567:+ | gene-YPL239W_CBS436 | rna-NM_001184053.1_CBS436 | cds-NP_015085.1_CBS436 | 99.0 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:86708-87310:+ | gene-YPL239W_CBS6412 | rna-NM_001184053.1_CBS6412 | cds-NP_015085.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:77693-78295:+ | gene-YPL239W_CBS6413 | rna-NM_001184053.1_CBS6413 | cds-NP_015085.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:99419-100021:+ | gene-YPL239W_CENPK1137D | rna-NM_001184053.1_CENPK1137D | cds-NP_015085.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:76629-77231:+ | gene-YPL239W_EthanolRed | rna-NM_001184053.1_EthanolRed | cds-NP_015085.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:83436-84038:+ | gene-YPL239W_FaliES1 | rna-NM_001184053.1_FaliES1 | cds-NP_015085.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:26485-27084:- | gene-YPL239W_JAY291 | rna-NM_001184053.1_JAY291 | cds-NP_015085.1_JAY291 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:94279-94878:+ | gene-YPL239W_MUCL30387 | rna-NM_001184053.1_MUCL30387 | cds-NP_015085.1_MUCL30387 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:92719-93318:+ | gene-YPL239W_MUCL30388 | rna-NM_001184053.1_MUCL30388 | cds-NP_015085.1_MUCL30388 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:74674-75276:+ | gene-YPL239W_MUCL39482 | rna-NM_001184053.1_MUCL39482 | cds-NP_015085.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:93547-94146:+ | gene-YPL239W_MUCL42920 | rna-NM_001184053.1_MUCL42920 | cds-NP_015085.1_MUCL42920 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:99467-100069:+ | gene-YPL239W_NCIM3186 | rna-NM_001184053.1_NCIM3186 | cds-NP_015085.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:81121-81723:+ | gene-YPL239W_NCYC1407 | rna-NM_001184053.1_NCYC1407 | cds-NP_015085.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:88856-89455:+ | gene-YPL239W_PE2H3 | rna-NM_001184053.1_PE2H3 | cds-NP_015085.1_PE2H3 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:88499-89098:+ | gene-YPL239W_PE2H4 | rna-NM_001184053.1_PE2H4 | cds-NP_015085.1_PE2H4 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:99484-100086:+ | gene-YPL239W_S288C | rna-NM_001184053.1_S288C | cds-NP_015085.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:41368-41967:+ | gene-YPL239W_SA1 | rna-NM_001184053.1_SA1 | cds-NP_015085.1_SA1 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:83437-84039:+ | gene-YPL239W_ThermosaccDry | rna-NM_001184053.1_ThermosaccDry | cds-NP_015085.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:323321-323920:+ | gene-YPL239W_VR1 | rna-NM_001184053.1_VR1 | cds-NP_015085.1_VR1 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:82981-83583:+ | gene-YPL239W_ZTW1 | rna-NM_001184053.1_ZTW1 | cds-NP_015085.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:84497-85096:+ | gene-YPL239W_Sparadoxus | rna-NM_001184053.1_Sparadoxus | cds-NP_015085.1_Sparadoxus | 88.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |