YAR010C (YAR010C)

Gene profile

Gene name: YAR010C
Reference locus (S288C): YAR010C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; Gag processing produces capsid proteins; in YARCTy1-1 TYB is mutant and probably non-functional

Top 10 interactors (score): YAR009C (0.711); ATP20 (0.591); UBX6 (0.567); PUP2 (0.499); SCL1 (0.487); ATP7 (0.454); MIG1 (0.453); DIT1 (0.452); FAT1 (0.451); PRE4 (0.45); VMA10 (0.45); PRE6 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011810.1:164421-165743:- gene-YAR010C_NCIM3186 rna-NM_001178214.1_NCIM3186 cds-NP_009407.1_NCIM3186 80.8 100.0 Verified 1 1 0 False False True False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000004.1:4207-4803:- gene-YAR010C_NCYC1407 rna-NM_001178214.1_NCYC1407 cds-NP_009407.1_NCYC1407 39.1 44.9 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:287176-288498:- gene-YAR010C_PE2H3 rna-NM_001178214.1_PE2H3 cds-NP_009407.1_PE2H3 99.7 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:297575-298897:- gene-YAR010C_PE2H4 rna-NM_001178214.1_PE2H4 cds-NP_009407.1_PE2H4 99.7 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001133.9:164544-165866:- gene-YAR010C_S288C rna-NM_001178214.1_S288C cds-NP_009407.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files