Gene name: YAR010C
Reference locus (S288C): YAR010C
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; Gag processing produces capsid proteins; in YARCTy1-1 TYB is mutant and probably non-functional
Top 10 interactors (score): YAR009C (0.711); ATP20 (0.591); UBX6 (0.567); PUP2 (0.499); SCL1 (0.487); ATP7 (0.454); MIG1 (0.453); DIT1 (0.452); FAT1 (0.451); PRE4 (0.45); VMA10 (0.45); PRE6 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:164421-165743:- | gene-YAR010C_NCIM3186 | rna-NM_001178214.1_NCIM3186 | cds-NP_009407.1_NCIM3186 | 80.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000004.1:4207-4803:- | gene-YAR010C_NCYC1407 | rna-NM_001178214.1_NCYC1407 | cds-NP_009407.1_NCYC1407 | 39.1 | 44.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:287176-288498:- | gene-YAR010C_PE2H3 | rna-NM_001178214.1_PE2H3 | cds-NP_009407.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:297575-298897:- | gene-YAR010C_PE2H4 | rna-NM_001178214.1_PE2H4 | cds-NP_009407.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:164544-165866:- | gene-YAR010C_S288C | rna-NM_001178214.1_S288C | cds-NP_009407.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |