Gene name: YAR009C
Reference locus (S288C): YAR009C
Gene biotype: protein_coding
Description: Truncated transposon Ty1-A Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; Gag processing produces capsid proteins, Pol is cleaved to produce protease, reverse transcriptase and integrase activities; in YARCTy1-1 TYB is mutant and probably non-functional; protein product forms cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): YCL020W (0.747); YMR046C (0.711); YAR010C (0.711); YJR026W (0.711); YPR137C-A (0.711); YJR028W (0.711); ATP20 (0.651); UBX6 (0.593); PUP2 (0.567); ALG2 (0.561); SCL1 (0.53); ATP7 (0.52); DIT1 (0.499); FAT1 (0.497); PRE6 (0.487); VMA10 (0.485); PRE4 (0.482); ECM4 (0.451); ATP14 (0.451); TRS65 (0.45)
Homologues (species, bitscore): dp (Drosophila melanogaster, 50.1); CRK8 (Arabidopsis thaliana, 91.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:76540-80129:- | gene-YAR009C_BG1 | rna-NM_001178213.1_BG1 | cds-NP_009406.1_BG1 | 97.7 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000003.1:1-1767:+ | gene-YAR009C_Bruggeman | rna-NM_001178213.1_Bruggeman | cds-NP_009406.1_Bruggeman | 48.2 | 49.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000232.1:79-1956:+ | gene-YAR009C_CAT1 | rna-NM_001178213.1_CAT1 | cds-NP_009406.1_CAT1 | 46.8 | 52.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:792740-795733:+ | gene-YAR009C_CBS436 | rna-NM_001178213.1_CBS436 | cds-NP_009406.1_CBS436 | 53.3 | 73.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000006.1:260-3653:- | gene-YAR009C_CBS6413 | rna-NM_001178213.1_CBS6413 | cds-NP_009406.1_CBS6413 | 89.2 | 94.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:458042-458369:+ | gene-YAR009C_CENPK1137D | rna-NM_001178213.1_CENPK1137D | cds-NP_009406.1_CENPK1137D | 9.1 | 9.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000075.1:263-1038:+ | gene-YAR009C_JAY291 | rna-NM_001178213.1_JAY291 | cds-NP_009406.1_JAY291 | 21.5 | 21.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000246.1:1-728:+ | gene-YAR009C_MUCL30387 | rna-NM_001178213.1_MUCL30387 | cds-NP_009406.1_MUCL30387 | 19.9 | 20.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000175.1:1782-2856:+ | gene-YAR009C_MUCL30388 | rna-NM_001178213.1_MUCL30388 | cds-NP_009406.1_MUCL30388 | 29.9 | 29.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000062.1:1-1246:+ | gene-YAR009C_MUCL42920 | rna-NM_001178213.1_MUCL42920 | cds-NP_009406.1_MUCL42920 | 34.6 | 34.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:645781-649370:- | gene-YAR009C_NCIM3186 | rna-NM_001178213.1_NCIM3186 | cds-NP_009406.1_NCIM3186 | 98.0 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:86203-89792:- | gene-YAR009C_PE2H3 | rna-NM_001178213.1_PE2H3 | cds-NP_009406.1_PE2H3 | 98.0 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:83713-87302:- | gene-YAR009C_PE2H4 | rna-NM_001178213.1_PE2H4 | cds-NP_009406.1_PE2H4 | 97.9 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:160597-164187:- | gene-YAR009C_S288C | rna-NM_001178213.1_S288C | cds-NP_009406.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000193.1:1-1548:- | gene-YAR009C_SA1 | rna-NM_001178213.1_SA1 | cds-NP_009406.1_SA1 | 40.4 | 43.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000002.1:1-1781:+ | gene-YAR009C_VR1 | rna-NM_001178213.1_VR1 | cds-NP_009406.1_VR1 | 47.1 | 49.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:401807-405396:+ | gene-YAR009C_Sparadoxus | rna-NM_001178213.1_Sparadoxus | cds-NP_009406.1_Sparadoxus | 89.5 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |