Gene name: XKS1
Reference locus (S288C): YGR194C
Gene biotype: protein_coding
Description: Xylulokinase; converts D-xylulose and ATP to xylulose 5-phosphate and ADP; rate limiting step in fermentation of xylulose; required for xylose fermentation by recombinant S. cerevisiae strains
Top 10 interactors (score): RPE1 (0.999); TAL1 (0.999); XYL2 (0.998); NQM1 (0.995); GRE3 (0.983); TKL1 (0.953); RKI1 (0.95); SOR1 (0.942); PHO13 (0.94); SOR2 (0.895); TKL2 (0.888); PGK1 (0.871); ZWF1 (0.862); TPI1 (0.861); GLC3 (0.809); GAL10 (0.792); PGI1 (0.79); HXT7 (0.781); GND1 (0.779); GND2 (0.777)
Homologues (species, bitscore): XYLB (Homo sapiens, 300.1); Xylb (Mus musculus, 305.1); xylb (Danio rerio, 283.1); XYLB (Xenopus tropicalis, 273.9); CG3534 (Drosophila melanogaster, 271.2); R08D7.7 (Caenorhabditis elegans, 262.7); XK-2 (Arabidopsis thaliana, 311.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:851588-853390:- | gene-YGR194C_AKU4011 | rna-NM_001181323.3_AKU4011 | cds-NP_011710.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:131922-133724:- | gene-YGR194C_BG1 | rna-NM_001181323.3_BG1 | cds-NP_011710.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:859781-861583:- | gene-YGR194C_Bruggeman | rna-NM_001181323.3_Bruggeman | cds-NP_011710.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:857794-859596:- | gene-YGR194C_CAT1 | rna-NM_001181323.3_CAT1 | cds-NP_011710.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:855030-856832:- | gene-YGR194C_CBS1585 | rna-NM_001181323.3_CBS1585 | cds-NP_011710.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:858388-860190:- | gene-YGR194C_CBS436 | rna-NM_001181323.3_CBS436 | cds-NP_011710.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:845901-847703:- | gene-YGR194C_CBS6412 | rna-NM_001181323.3_CBS6412 | cds-NP_011710.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:851959-853761:- | gene-YGR194C_CBS6413 | rna-NM_001181323.3_CBS6413 | cds-NP_011710.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:885799-887601:- | gene-YGR194C_CENPK1137D | rna-NM_001181323.3_CENPK1137D | cds-NP_011710.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:840409-842211:- | gene-YGR194C_EthanolRed | rna-NM_001181323.3_EthanolRed | cds-NP_011710.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:844800-846602:- | gene-YGR194C_FaliES1 | rna-NM_001181323.3_FaliES1 | cds-NP_011710.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:2531-4333:- | gene-YGR194C_JAY291 | rna-NM_001181323.3_JAY291 | cds-NP_011710.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:857271-859073:- | gene-YGR194C_MUCL30387 | rna-NM_001181323.3_MUCL30387 | cds-NP_011710.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:856958-858760:- | gene-YGR194C_MUCL30388 | rna-NM_001181323.3_MUCL30388 | cds-NP_011710.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:850103-851905:- | gene-YGR194C_MUCL39482 | rna-NM_001181323.3_MUCL39482 | cds-NP_011710.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:867654-869456:- | gene-YGR194C_MUCL42920 | rna-NM_001181323.3_MUCL42920 | cds-NP_011710.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:886073-887875:- | gene-YGR194C_NCIM3186 | rna-NM_001181323.3_NCIM3186 | cds-NP_011710.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:845761-847563:- | gene-YGR194C_NCYC1407 | rna-NM_001181323.3_NCYC1407 | cds-NP_011710.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:870371-872173:- | gene-YGR194C_PE2H3 | rna-NM_001181323.3_PE2H3 | cds-NP_011710.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:875481-877283:- | gene-YGR194C_PE2H4 | rna-NM_001181323.3_PE2H4 | cds-NP_011710.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:886073-887875:- | gene-YGR194C_S288C | rna-NM_001181323.3_S288C | cds-NP_011710.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000101.1:7522-9324:- | gene-YGR194C_SA1 | rna-NM_001181323.3_SA1 | cds-NP_011710.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:865311-867113:- | gene-YGR194C_ThermosaccDry | rna-NM_001181323.3_ThermosaccDry | cds-NP_011710.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:969801-971603:- | gene-YGR194C_VR1 | rna-NM_001181323.3_VR1 | cds-NP_011710.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:166757-168559:- | gene-YGR194C_ZTW1 | rna-NM_001181323.3_ZTW1 | cds-NP_011710.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:857627-859430:- | gene-YGR194C_Sparadoxus | rna-NM_001181323.3_Sparadoxus | cds-NP_011710.3_Sparadoxus | 87.4 | 99.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |