Gene name: XBP1
Reference locus (S288C): YIL101C
Gene biotype: protein_coding
Description: Transcriptional repressor; binds promoter sequences of cyclin genes, CYS3, and SMF2; not expressed during log phase of growth, but induced by stress or starvation during mitosis, and late in meiosis; represses 15% of all yeast genes as cells transition to quiescence; important for maintaining G1 arrest and for longevity of quiescent cells; member of Swi4p/Mbp1p family; phosphorylated by Cdc28p; relative distribution to nucleus increases upon DNA replication stress
Top 10 interactors (score): DDR2 (0.967); USV1 (0.927); MSC1 (0.921); SOL4 (0.896); OM45 (0.887); CTT1 (0.881); TSL1 (0.868); DCS2 (0.867); SWI4 (0.864); MBP1 (0.855); PHM7 (0.848); RTN2 (0.843); BDH2 (0.831); GAD1 (0.825); GLC3 (0.817); TFS1 (0.811); PGM2 (0.788); SWI6 (0.775); RTC3 (0.772); ALD3 (0.769)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:176743-178686:- | gene-YIL101C_AKU4011 | rna-NM_001179449.1_AKU4011 | cds-NP_012165.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:39750-41693:- | gene-YIL101C_BG1 | rna-NM_001179449.1_BG1 | cds-NP_012165.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:181441-183387:- | gene-YIL101C_Bruggeman | rna-NM_001179449.1_Bruggeman | cds-NP_012165.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:173491-175434:- | gene-YIL101C_CAT1 | rna-NM_001179449.1_CAT1 | cds-NP_012165.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:176999-178942:- | gene-YIL101C_CBS1585 | rna-NM_001179449.1_CBS1585 | cds-NP_012165.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:167988-169931:- | gene-YIL101C_CBS436 | rna-NM_001179449.1_CBS436 | cds-NP_012165.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:174379-176322:- | gene-YIL101C_CBS6412 | rna-NM_001179449.1_CBS6412 | cds-NP_012165.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:168032-169975:- | gene-YIL101C_CBS6413 | rna-NM_001179449.1_CBS6413 | cds-NP_012165.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:167020-168963:- | gene-YIL101C_CENPK1137D | rna-NM_001179449.1_CENPK1137D | cds-NP_012165.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:161964-163907:- | gene-YIL101C_EthanolRed | rna-NM_001179449.1_EthanolRed | cds-NP_012165.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:177959-179902:- | gene-YIL101C_FaliES1 | rna-NM_001179449.1_FaliES1 | cds-NP_012165.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:48567-50510:+ | gene-YIL101C_JAY291 | rna-NM_001179449.1_JAY291 | cds-NP_012165.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:179165-181111:- | gene-YIL101C_MUCL30387 | rna-NM_001179449.1_MUCL30387 | cds-NP_012165.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:176956-178902:- | gene-YIL101C_MUCL30388 | rna-NM_001179449.1_MUCL30388 | cds-NP_012165.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:177845-179788:- | gene-YIL101C_MUCL39482 | rna-NM_001179449.1_MUCL39482 | cds-NP_012165.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:181097-183040:- | gene-YIL101C_MUCL42920 | rna-NM_001179449.1_MUCL42920 | cds-NP_012165.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:175307-177250:- | gene-YIL101C_NCIM3186 | rna-NM_001179449.1_NCIM3186 | cds-NP_012165.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:181888-183831:- | gene-YIL101C_NCYC1407 | rna-NM_001179449.1_NCYC1407 | cds-NP_012165.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:176449-178392:- | gene-YIL101C_PE2H3 | rna-NM_001179449.1_PE2H3 | cds-NP_012165.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:170400-172343:- | gene-YIL101C_PE2H4 | rna-NM_001179449.1_PE2H4 | cds-NP_012165.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:175307-177250:- | gene-YIL101C_S288C | rna-NM_001179449.1_S288C | cds-NP_012165.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:6098-8041:+ | gene-YIL101C_SA1 | rna-NM_001179449.1_SA1 | cds-NP_012165.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:176628-178571:- | gene-YIL101C_ThermosaccDry | rna-NM_001179449.1_ThermosaccDry | cds-NP_012165.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:173597-175549:- | gene-YIL101C_VR1 | rna-NM_001179449.1_VR1 | cds-NP_012165.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:151562-153505:- | gene-YIL101C_ZTW1 | rna-NM_001179449.1_ZTW1 | cds-NP_012165.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:175494-177419:- | gene-YIL101C_Sparadoxus | rna-NM_001179449.1_Sparadoxus | cds-NP_012165.1_Sparadoxus | 86.8 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |