Gene name: WHI4
Reference locus (S288C): YDL224C
Gene biotype: protein_coding
Description: Protein WHI4; Putative RNA binding protein; regulates the cell size requirement for passage through Start and commitment to cell division; WHI4 has a paralog, WHI3, that arose from the whole genome duplication
Top 10 interactors (score): WHI3 (0.999); NOT3 (0.795); CLB5 (0.786); PMD1 (0.752); UBP1 (0.616); EST2 (0.616); TIF4631 (0.6); UFO1 (0.582); CLG1 (0.572); MSB1 (0.571); CAF40 (0.558); KRE1 (0.553); RPG1 (0.549); TIF4632 (0.546); CDC33 (0.545); TIF2 (0.517); TIF1 (0.516); RPL41A (0.499); DSE2 (0.487); RPS6B (0.474)
Homologues (species, bitscore): mec-8 (Caenorhabditis elegans, 59.3); AT3G21215 (Arabidopsis thaliana, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:37892-39841:- | gene-YDL224C_AKU4011 | rna-NM_001180284.1_AKU4011 | cds-NP_010057.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:27261-29210:+ | gene-YDL224C_BG1 | rna-NM_001180284.1_BG1 | cds-NP_010057.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:53574-55523:- | gene-YDL224C_Bruggeman | rna-NM_001180284.1_Bruggeman | cds-NP_010057.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:273371-275320:- | gene-YDL224C_CAT1 | rna-NM_001180284.1_CAT1 | cds-NP_010057.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:36767-38716:- | gene-YDL224C_CBS1585 | rna-NM_001180284.1_CBS1585 | cds-NP_010057.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:251646-253595:- | gene-YDL224C_CBS436 | rna-NM_001180284.1_CBS436 | cds-NP_010057.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:36879-38828:- | gene-YDL224C_CBS6412 | rna-NM_001180284.1_CBS6412 | cds-NP_010057.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:54402-56351:- | gene-YDL224C_CBS6413 | rna-NM_001180284.1_CBS6413 | cds-NP_010057.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:53063-55012:- | gene-YDL224C_CENPK1137D | rna-NM_001180284.1_CENPK1137D | cds-NP_010057.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:50337-52286:- | gene-YDL224C_EthanolRed | rna-NM_001180284.1_EthanolRed | cds-NP_010057.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:54664-56613:- | gene-YDL224C_FaliES1 | rna-NM_001180284.1_FaliES1 | cds-NP_010057.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000213.1:8990-10939:- | gene-YDL224C_JAY291 | rna-NM_001180284.1_JAY291 | cds-NP_010057.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:52514-54463:- | gene-YDL224C_MUCL30387 | rna-NM_001180284.1_MUCL30387 | cds-NP_010057.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:260332-262281:- | gene-YDL224C_MUCL30388 | rna-NM_001180284.1_MUCL30388 | cds-NP_010057.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:37610-39559:- | gene-YDL224C_MUCL39482 | rna-NM_001180284.1_MUCL39482 | cds-NP_010057.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:53659-55608:- | gene-YDL224C_MUCL42920 | rna-NM_001180284.1_MUCL42920 | cds-NP_010057.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:54320-56269:- | gene-YDL224C_NCIM3186 | rna-NM_001180284.1_NCIM3186 | cds-NP_010057.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:37567-39516:- | gene-YDL224C_NCYC1407 | rna-NM_001180284.1_NCYC1407 | cds-NP_010057.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:44603-46552:- | gene-YDL224C_PE2H3 | rna-NM_001180284.1_PE2H3 | cds-NP_010057.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:44613-46562:- | gene-YDL224C_PE2H4 | rna-NM_001180284.1_PE2H4 | cds-NP_010057.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:54397-56346:- | gene-YDL224C_S288C | rna-NM_001180284.1_S288C | cds-NP_010057.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000094.1:8796-10745:- | gene-YDL224C_SA1 | rna-NM_001180284.1_SA1 | cds-NP_010057.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:54419-56368:- | gene-YDL224C_ThermosaccDry | rna-NM_001180284.1_ThermosaccDry | cds-NP_010057.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:54590-56539:- | gene-YDL224C_VR1 | rna-NM_001180284.1_VR1 | cds-NP_010057.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:53584-55533:- | gene-YDL224C_ZTW1 | rna-NM_001180284.1_ZTW1 | cds-NP_010057.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:57000-58949:- | gene-YDL224C_Sparadoxus | rna-NM_001180284.1_Sparadoxus | cds-NP_010057.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |