Gene name: VVS1
Reference locus (S288C): YBR241C
Gene biotype: protein_coding
Description: Probable metabolite transport protein YBR241C; Putative transporter, member of the sugar porter family; green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane; YBR241C is not an essential gene; YBR241C has a paralog, VPS73, that arose from the whole genome duplication
Top 10 interactors (score): SEC4 (0.981); BXI1 (0.819); AAP1 (0.803); APE2 (0.803); TAF6 (0.772); ARC1 (0.752); TMA108 (0.748); CHC1 (0.71); SNC2 (0.683); SNC1 (0.683); BZZ1 (0.661); ARF3 (0.66); YKT6 (0.644); NNR1 (0.642); RHO1 (0.636); RHO2 (0.632); RHO4 (0.632); RHO3 (0.632); SDS24 (0.624); FMP45 (0.615)
Homologues (species, bitscore): SLC2A1 (Homo sapiens, 218.0); Slc2a1 (Mus musculus, 214.5); slc2a1b (Danio rerio, 218.8); slc2a3 (Xenopus tropicalis, 216.1); Glut1 (Drosophila melanogaster, 210.7); fgt-1 (Caenorhabditis elegans, 181.8); AT3G05150 (Arabidopsis thaliana, 178.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:686898-688364:- | gene-YBR241C_AKU4011 | rna-NM_001178589.1_AKU4011 | cds-NP_009800.1_AKU4011 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:57906-59372:- | gene-YBR241C_BG1 | rna-NM_001178589.1_BG1 | cds-NP_009800.1_BG1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:688041-689507:- | gene-YBR241C_Bruggeman | rna-NM_001178589.1_Bruggeman | cds-NP_009800.1_Bruggeman | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:691529-692995:- | gene-YBR241C_CAT1 | rna-NM_001178589.1_CAT1 | cds-NP_009800.1_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:678464-679930:- | gene-YBR241C_CBS1585 | rna-NM_001178589.1_CBS1585 | cds-NP_009800.1_CBS1585 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:684884-686350:- | gene-YBR241C_CBS436 | rna-NM_001178589.1_CBS436 | cds-NP_009800.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:773070-774536:- | gene-YBR241C_CBS6412 | rna-NM_001178589.1_CBS6412 | cds-NP_009800.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:684513-685979:- | gene-YBR241C_CBS6413 | rna-NM_001178589.1_CBS6413 | cds-NP_009800.1_CBS6413 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:696506-697972:- | gene-YBR241C_CENPK1137D | rna-NM_001178589.1_CENPK1137D | cds-NP_009800.1_CENPK1137D | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:809919-811385:- | gene-YBR241C_EthanolRed | rna-NM_001178589.1_EthanolRed | cds-NP_009800.1_EthanolRed | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:703266-704732:- | gene-YBR241C_FaliES1 | rna-NM_001178589.1_FaliES1 | cds-NP_009800.1_FaliES1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:99328-100794:+ | gene-YBR241C_JAY291 | rna-NM_001178589.1_JAY291 | cds-NP_009800.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:690084-691550:- | gene-YBR241C_MUCL30387 | rna-NM_001178589.1_MUCL30387 | cds-NP_009800.1_MUCL30387 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:707167-708633:- | gene-YBR241C_MUCL30388 | rna-NM_001178589.1_MUCL30388 | cds-NP_009800.1_MUCL30388 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:676771-678237:- | gene-YBR241C_MUCL39482 | rna-NM_001178589.1_MUCL39482 | cds-NP_009800.1_MUCL39482 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:686617-688083:- | gene-YBR241C_MUCL42920 | rna-NM_001178589.1_MUCL42920 | cds-NP_009800.1_MUCL42920 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:702386-703852:- | gene-YBR241C_NCIM3186 | rna-NM_001178589.1_NCIM3186 | cds-NP_009800.1_NCIM3186 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:678660-680126:- | gene-YBR241C_NCYC1407 | rna-NM_001178589.1_NCYC1407 | cds-NP_009800.1_NCYC1407 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:701768-703234:- | gene-YBR241C_PE2H3 | rna-NM_001178589.1_PE2H3 | cds-NP_009800.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:699444-700910:- | gene-YBR241C_PE2H4 | rna-NM_001178589.1_PE2H4 | cds-NP_009800.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:702589-704055:- | gene-YBR241C_S288C | rna-NM_001178589.1_S288C | cds-NP_009800.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:57729-59195:- | gene-YBR241C_SA1 | rna-NM_001178589.1_SA1 | cds-NP_009800.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:702258-703724:- | gene-YBR241C_ThermosaccDry | rna-NM_001178589.1_ThermosaccDry | cds-NP_009800.1_ThermosaccDry | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:682477-683943:- | gene-YBR241C_VR1 | rna-NM_001178589.1_VR1 | cds-NP_009800.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:675120-676586:- | gene-YBR241C_ZTW1 | rna-NM_001178589.1_ZTW1 | cds-NP_009800.1_ZTW1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:719086-720552:- | gene-YBR241C_Sparadoxus | rna-NM_001178589.1_Sparadoxus | cds-NP_009800.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |