Gene name: VTS1
Reference locus (S288C): YOR359W
Gene biotype: protein_coding
Description: Protein VTS1; Flap-structured DNA-binding and RNA-binding protein; stimulates deadenylation-dependent mRNA degradation mediated by the CCR4-NOT deadenylase complex; member of the Smaug (Smg) family of post-transcriptional regulators which bind RNA through a conserved sterile alpha motif (SAM) domain that interacts with Smg recognition element (SREs) containing transcripts; stimulates Dna2p endonuclease activity
Top 10 interactors (score): PAB1 (0.969); PUF3 (0.917); MPT5 (0.88); NOG2 (0.82); HEK2 (0.812); HMT1 (0.801); CCR4 (0.784); PUF4 (0.774); UTP15 (0.757); TOD6 (0.746); NOG1 (0.73); YLL032C (0.727); DHH1 (0.724); GIS2 (0.717); SCD6 (0.713); PFS2 (0.707); PUB1 (0.703); PUF2 (0.69); TCP1 (0.673); TDA3 (0.669)
Homologues (species, bitscore): SAMD4B (Homo sapiens, 50.8); Pak4 (Mus musculus, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:997773-999344:+ | gene-YOR359W_AKU4011 | rna-NM_001183779.3_AKU4011 | cds-NP_015004.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:34949-36520:+ | gene-YOR359W_BG1 | rna-NM_001183779.3_BG1 | cds-NP_015004.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:982590-984161:+ | gene-YOR359W_Bruggeman | rna-NM_001183779.3_Bruggeman | cds-NP_015004.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:982418-983989:+ | gene-YOR359W_CAT1 | rna-NM_001183779.3_CAT1 | cds-NP_015004.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:982183-983754:+ | gene-YOR359W_CBS1585 | rna-NM_001183779.3_CBS1585 | cds-NP_015004.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:976996-978567:+ | gene-YOR359W_CBS436 | rna-NM_001183779.3_CBS436 | cds-NP_015004.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:211485-213056:+ | gene-YOR359W_CBS6412 | rna-NM_001183779.3_CBS6412 | cds-NP_015004.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:986456-988027:+ | gene-YOR359W_CBS6413 | rna-NM_001183779.3_CBS6413 | cds-NP_015004.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1011011-1012582:+ | gene-YOR359W_CENPK1137D | rna-NM_001183779.3_CENPK1137D | cds-NP_015004.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:226482-228053:+ | gene-YOR359W_EthanolRed | rna-NM_001183779.3_EthanolRed | cds-NP_015004.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:979311-980882:+ | gene-YOR359W_FaliES1 | rna-NM_001183779.3_FaliES1 | cds-NP_015004.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:24792-26363:- | gene-YOR359W_JAY291 | rna-NM_001183779.3_JAY291 | cds-NP_015004.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:991918-993489:+ | gene-YOR359W_MUCL30387 | rna-NM_001183779.3_MUCL30387 | cds-NP_015004.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:999943-1001514:+ | gene-YOR359W_MUCL30388 | rna-NM_001183779.3_MUCL30388 | cds-NP_015004.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:988718-990289:+ | gene-YOR359W_MUCL39482 | rna-NM_001183779.3_MUCL39482 | cds-NP_015004.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:996324-997895:+ | gene-YOR359W_MUCL42920 | rna-NM_001183779.3_MUCL42920 | cds-NP_015004.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1011078-1012649:+ | gene-YOR359W_NCIM3186 | rna-NM_001183779.3_NCIM3186 | cds-NP_015004.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:989726-991297:+ | gene-YOR359W_NCYC1407 | rna-NM_001183779.3_NCYC1407 | cds-NP_015004.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:984986-986557:+ | gene-YOR359W_PE2H3 | rna-NM_001183779.3_PE2H3 | cds-NP_015004.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1001337-1002908:+ | gene-YOR359W_PE2H4 | rna-NM_001183779.3_PE2H4 | cds-NP_015004.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1011189-1012760:+ | gene-YOR359W_S288C | rna-NM_001183779.3_S288C | cds-NP_015004.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:115720-117291:+ | gene-YOR359W_SA1 | rna-NM_001183779.3_SA1 | cds-NP_015004.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:978481-980052:+ | gene-YOR359W_ThermosaccDry | rna-NM_001183779.3_ThermosaccDry | cds-NP_015004.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1039736-1041307:+ | gene-YOR359W_VR1 | rna-NM_001183779.3_VR1 | cds-NP_015004.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:711211-712782:+ | gene-YOR359W_ZTW1 | rna-NM_001183779.3_ZTW1 | cds-NP_015004.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:984673-986259:+ | gene-YOR359W_Sparadoxus | rna-NM_001183779.3_Sparadoxus | cds-NP_015004.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |