Gene name: VTI1
Reference locus (S288C): YMR197C
Gene biotype: protein_coding
Description: t-SNARE VTI1; Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways; human homolog VTI1A can complement yeast null mutant; Belongs to the VTI1 family
Top 10 interactors (score): VPS33 (0.999); SEC17 (0.999); VAM3 (0.999); YKT6 (0.999); SED5 (0.999); VAM7 (0.999); NYV1 (0.999); PEP3 (0.999); VPS16 (0.999); PEP12 (0.999); VPS41 (0.999); TLG1 (0.999); TLG2 (0.999); VPS45 (0.998); SNC2 (0.997); SEC22 (0.996); SNC1 (0.995); BET1 (0.995); PEP5 (0.994); GOS1 (0.991)
Homologues (species, bitscore): VTI1A (Homo sapiens, 100.1); Vti1a (Mus musculus, 104.0); vti1a (Danio rerio, 99.8); vti1b (Xenopus tropicalis, 63.2); Vti1 (Drosophila melanogaster, 85.9); vti-1 (Caenorhabditis elegans, 95.9); VTI13 (Arabidopsis thaliana, 87.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:698457-699110:- | gene-YMR197C_AKU4011 | rna-NM_001182704.1_AKU4011 | cds-NP_013924.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:255471-256124:+ | gene-YMR197C_BG1 | rna-NM_001182704.1_BG1 | cds-NP_013924.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:642685-643338:- | gene-YMR197C_Bruggeman | rna-NM_001182704.1_Bruggeman | cds-NP_013924.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:645935-646588:- | gene-YMR197C_CAT1 | rna-NM_001182704.1_CAT1 | cds-NP_013924.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:630714-631367:- | gene-YMR197C_CBS1585 | rna-NM_001182704.1_CBS1585 | cds-NP_013924.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:634983-635636:- | gene-YMR197C_CBS436 | rna-NM_001182704.1_CBS436 | cds-NP_013924.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:742272-742925:- | gene-YMR197C_CBS6412 | rna-NM_001182704.1_CBS6412 | cds-NP_013924.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:629864-630517:- | gene-YMR197C_CBS6413 | rna-NM_001182704.1_CBS6413 | cds-NP_013924.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:653234-653887:- | gene-YMR197C_CENPK1137D | rna-NM_001182704.1_CENPK1137D | cds-NP_013924.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:690904-691557:- | gene-YMR197C_EthanolRed | rna-NM_001182704.1_EthanolRed | cds-NP_013924.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:636560-637213:- | gene-YMR197C_FaliES1 | rna-NM_001182704.1_FaliES1 | cds-NP_013924.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:148788-149441:+ | gene-YMR197C_JAY291 | rna-NM_001182704.1_JAY291 | cds-NP_013924.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:636232-636885:- | gene-YMR197C_MUCL30387 | rna-NM_001182704.1_MUCL30387 | cds-NP_013924.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:643007-643660:- | gene-YMR197C_MUCL30388 | rna-NM_001182704.1_MUCL30388 | cds-NP_013924.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:631786-632439:- | gene-YMR197C_MUCL39482 | rna-NM_001182704.1_MUCL39482 | cds-NP_013924.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:639127-639780:- | gene-YMR197C_MUCL42920 | rna-NM_001182704.1_MUCL42920 | cds-NP_013924.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:658499-659152:- | gene-YMR197C_NCIM3186 | rna-NM_001182704.1_NCIM3186 | cds-NP_013924.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:631437-632090:- | gene-YMR197C_NCYC1407 | rna-NM_001182704.1_NCYC1407 | cds-NP_013924.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:641296-641949:- | gene-YMR197C_PE2H3 | rna-NM_001182704.1_PE2H3 | cds-NP_013924.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:642315-642968:- | gene-YMR197C_PE2H4 | rna-NM_001182704.1_PE2H4 | cds-NP_013924.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:658545-659198:- | gene-YMR197C_S288C | rna-NM_001182704.1_S288C | cds-NP_013924.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:148914-149567:+ | gene-YMR197C_SA1 | rna-NM_001182704.1_SA1 | cds-NP_013924.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:632686-633339:- | gene-YMR197C_ThermosaccDry | rna-NM_001182704.1_ThermosaccDry | cds-NP_013924.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:645829-646482:- | gene-YMR197C_VR1 | rna-NM_001182704.1_VR1 | cds-NP_013924.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:48465-49118:- | gene-YMR197C_ZTW1 | rna-NM_001182704.1_ZTW1 | cds-NP_013924.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:650595-651248:- | gene-YMR197C_Sparadoxus | rna-NM_001182704.1_Sparadoxus | cds-NP_013924.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |