Gene name: VTH2
Reference locus (S288C): YJL222W
Gene biotype: protein_coding
Description: VPS10 homolog 2; Putative membrane glycoprotein; has strong similarity to Vth1p and Pep1p/Vps10p; may be involved in vacuolar protein sorting
Top 10 interactors (score): VTH1 (0.873); FMP33 (0.779); YJL022W (0.779); YJL027C (0.779); YJL028W (0.779); YJR056C (0.771); HIT1 (0.771); YPR063C (0.749); REE1 (0.731); VPS35 (0.691); MRL1 (0.683); MNL2 (0.68); YNL058C (0.671); YCR061W (0.617); MIS1 (0.599); BDS1 (0.573); TED1 (0.569); SOR1 (0.563); MPM1 (0.552); COS10 (0.527)
Homologues (species, bitscore): SORT1 (Homo sapiens, 170.2); Sorl1 (Mus musculus, 171.8); sorl1 (Danio rerio, 171.8); sorl1 (Xenopus tropicalis, 168.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:6409-11307:+ | gene-YJL222W_AKU4011 | rna-NM_001181655.1_AKU4011 | cds-NP_012313.1_AKU4011 | 94.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000131.1:1-1819:- | gene-YJL222W_BG1 | rna-NM_001181655.1_BG1 | cds-NP_012313.1_BG1 | 37.7 | 39.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:11682-16333:+ | gene-YJL222W_Bruggeman | rna-NM_001181655.1_Bruggeman | cds-NP_012313.1_Bruggeman | 71.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:9796-14445:+ | gene-YJL222W_CAT1 | rna-NM_001181655.1_CAT1 | cds-NP_012313.1_CAT1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:12755-17414:+ | gene-YJL222W_CBS1585 | rna-NM_001181655.1_CBS1585 | cds-NP_012313.1_CBS1585 | 51.8 | 83.8 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:11165-15390:+ | gene-YJL222W_CBS6412 | rna-NM_001181655.1_CBS6412 | cds-NP_012313.1_CBS6412 | 89.8 | 90.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711451.1:1-2914:- | gene-YJL222W_CENPK1137D | rna-NM_001181655.1_CENPK1137D | cds-NP_012313.1_CENPK1137D | 62.6 | 62.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:1-2340:+ | gene-YJL222W_EthanolRed | rna-NM_001181655.1_EthanolRed | cds-NP_012313.1_EthanolRed | 49.3 | 50.3 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:5323-10221:+ | gene-YJL222W_FaliES1 | rna-NM_001181655.1_FaliES1 | cds-NP_012313.1_FaliES1 | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000229.1:1-508:+ | gene-YJL222W_JAY291 | rna-NM_001181655.1_JAY291 | cds-NP_012313.1_JAY291 | 10.7 | 10.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:13403-18051:+ | gene-YJL222W_MUCL30387 | rna-NM_001181655.1_MUCL30387 | cds-NP_012313.1_MUCL30387 | 64.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:12482-16957:+ | gene-YJL222W_MUCL39482 | rna-NM_001181655.1_MUCL39482 | cds-NP_012313.1_MUCL39482 | 55.1 | 95.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:8315-12974:+ | gene-YJL222W_MUCL42920 | rna-NM_001181655.1_MUCL42920 | cds-NP_012313.1_MUCL42920 | 51.4 | 91.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:11454-16103:+ | gene-YJL222W_NCIM3186 | rna-NM_001181655.1_NCIM3186 | cds-NP_012313.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:10068-14543:+ | gene-YJL222W_NCYC1407 | rna-NM_001181655.1_NCYC1407 | cds-NP_012313.1_NCYC1407 | 92.9 | 95.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:12937-17586:+ | gene-YJL222W_PE2H3 | rna-NM_001181655.1_PE2H3 | cds-NP_012313.1_PE2H3 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:6899-11548:+ | gene-YJL222W_PE2H4 | rna-NM_001181655.1_PE2H4 | cds-NP_012313.1_PE2H4 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:11475-16124:+ | gene-YJL222W_S288C | rna-NM_001181655.1_S288C | cds-NP_012313.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:2028-6675:+ | gene-YJL222W_ThermosaccDry | rna-NM_001181655.1_ThermosaccDry | cds-NP_012313.1_ThermosaccDry | 77.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:10098-14747:+ | gene-YJL222W_VR1 | rna-NM_001181655.1_VR1 | cds-NP_012313.1_VR1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |