Gene name: VTH1
Reference locus (S288C): YIL173W
Gene biotype: protein_coding
Description: VPS10 homolog 1; Putative membrane glycoprotein; has strong similarity to Vth2p and Pep1p/Vps10p; may be involved in vacuolar protein sorting
Top 10 interactors (score): VTH2 (0.873); VPS35 (0.733); MRL1 (0.725); BDS1 (0.691); PEP8 (0.637); COS10 (0.618); CSS1 (0.616); REE1 (0.612); VPS29 (0.606); AIF1 (0.577); HXT9 (0.574); AYT1 (0.574); ASP3-1 (0.574); ASP3-4 (0.573); HXT11 (0.573); IMA2 (0.57); SRP54 (0.568); YPT7 (0.565); UBP7 (0.55); HXT14 (0.526)
Homologues (species, bitscore): SORT1 (Homo sapiens, 170.2); Sorl1 (Mus musculus, 171.8); sorl1 (Danio rerio, 172.2); sorl1 (Xenopus tropicalis, 168.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:14175-16720:+ | gene-YIL173W_Bruggeman | rna-NM_001179519.1_Bruggeman | cds-NP_012095.1_Bruggeman | 46.7 | 49.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:12200-16849:+ | gene-YIL173W_CBS1585 | rna-NM_001179519.1_CBS1585 | cds-NP_012095.1_CBS1585 | 65.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:9767-14416:+ | gene-YIL173W_CBS6413 | rna-NM_001179519.1_CBS6413 | cds-NP_012095.1_CBS6413 | 94.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:6809-7847:+ | gene-YIL173W_CENPK1137D | rna-NM_001179519.1_CENPK1137D | cds-NP_012095.1_CENPK1137D | 22.3 | 22.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:4018-5345:+ | gene-YIL173W_EthanolRed | rna-NM_001179519.1_EthanolRed | cds-NP_012095.1_EthanolRed | 28.3 | 28.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000088.1:1-1826:- | gene-YIL173W_JAY291 | rna-NM_001179519.1_JAY291 | cds-NP_012095.1_JAY291 | 38.2 | 39.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:12086-13644:+ | gene-YIL173W_MUCL30387 | rna-NM_001179519.1_MUCL30387 | cds-NP_012095.1_MUCL30387 | 33.1 | 33.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:9887-14536:+ | gene-YIL173W_MUCL30388 | rna-NM_001179519.1_MUCL30388 | cds-NP_012095.1_MUCL30388 | 73.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:9855-14514:+ | gene-YIL173W_MUCL39482 | rna-NM_001179519.1_MUCL39482 | cds-NP_012095.1_MUCL39482 | 54.2 | 76.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:12862-15127:+ | gene-YIL173W_MUCL42920 | rna-NM_001179519.1_MUCL42920 | cds-NP_012095.1_MUCL42920 | 48.3 | 48.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:11492-16141:+ | gene-YIL173W_S288C | rna-NM_001179519.1_S288C | cds-NP_012095.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:13584-15817:+ | gene-YIL173W_ThermosaccDry | rna-NM_001179519.1_ThermosaccDry | cds-NP_012095.1_ThermosaccDry | 47.9 | 48.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |