Gene name: VTC3
Reference locus (S288C): YPL019C
Gene biotype: protein_coding
Description: Regulatory subunit of the vacuolar transporter chaperone (VTC) complex; involved in membrane trafficking, vacuolar polyphosphate accumulation, microautophagy and non-autophagic vacuolar fusion; VTC3 has a paralog, VTC2, that arose from the whole genome duplication; Belongs to the VTC2/3 family
Top 10 interactors (score): VTC4 (0.991); VTC1 (0.989); PHO84 (0.981); PHO11 (0.977); SPL2 (0.973); PHO12 (0.96); VTC5 (0.94); PHO81 (0.929); VTC2 (0.897); PHM6 (0.896); GDE1 (0.885); PHO5 (0.86); PHO89 (0.764); CCT8 (0.722); CCT6 (0.721); CCT2 (0.721); TCP1 (0.721); CCT4 (0.721); CCT7 (0.721); CCT3 (0.721)
Homologues (species, bitscore): XPR1 (Homo sapiens, 58.5); Xpr1 (Mus musculus, 58.5); xpr1 (Danio rerio, 55.1); xpr1 (Xenopus tropicalis, 57.0); CG7536 (Drosophila melanogaster, 56.6); Y39A1A.22 (Caenorhabditis elegans, 58.9); SPX2 (Arabidopsis thaliana, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:486000-488507:- | gene-YPL019C_AKU4011 | rna-NM_001183833.1_AKU4011 | cds-NP_015306.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:408837-411344:+ | gene-YPL019C_BG1 | rna-NM_001183833.1_BG1 | cds-NP_015306.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:562949-565456:- | gene-YPL019C_Bruggeman | rna-NM_001183833.1_Bruggeman | cds-NP_015306.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:602613-605120:- | gene-YPL019C_CAT1 | rna-NM_001183833.1_CAT1 | cds-NP_015306.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:490072-492579:- | gene-YPL019C_CBS1585 | rna-NM_001183833.1_CBS1585 | cds-NP_015306.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:504199-506706:- | gene-YPL019C_CBS436 | rna-NM_001183833.1_CBS436 | cds-NP_015306.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:494263-496770:- | gene-YPL019C_CBS6412 | rna-NM_001183833.1_CBS6412 | cds-NP_015306.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:486625-489132:- | gene-YPL019C_CBS6413 | rna-NM_001183833.1_CBS6413 | cds-NP_015306.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:514472-516979:- | gene-YPL019C_CENPK1137D | rna-NM_001183833.1_CENPK1137D | cds-NP_015306.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:484364-486871:- | gene-YPL019C_EthanolRed | rna-NM_001183833.1_EthanolRed | cds-NP_015306.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:492194-494701:- | gene-YPL019C_FaliES1 | rna-NM_001183833.1_FaliES1 | cds-NP_015306.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:100795-103302:- | gene-YPL019C_JAY291 | rna-NM_001183833.1_JAY291 | cds-NP_015306.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:503897-506404:- | gene-YPL019C_MUCL30387 | rna-NM_001183833.1_MUCL30387 | cds-NP_015306.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:503005-505512:- | gene-YPL019C_MUCL30388 | rna-NM_001183833.1_MUCL30388 | cds-NP_015306.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:483390-485897:- | gene-YPL019C_MUCL39482 | rna-NM_001183833.1_MUCL39482 | cds-NP_015306.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:542517-545024:- | gene-YPL019C_MUCL42920 | rna-NM_001183833.1_MUCL42920 | cds-NP_015306.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:514494-517001:- | gene-YPL019C_NCIM3186 | rna-NM_001183833.1_NCIM3186 | cds-NP_015306.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:490667-493174:- | gene-YPL019C_NCYC1407 | rna-NM_001183833.1_NCYC1407 | cds-NP_015306.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:497323-499830:- | gene-YPL019C_PE2H3 | rna-NM_001183833.1_PE2H3 | cds-NP_015306.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:496938-499445:- | gene-YPL019C_PE2H4 | rna-NM_001183833.1_PE2H4 | cds-NP_015306.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:514511-517018:- | gene-YPL019C_S288C | rna-NM_001183833.1_S288C | cds-NP_015306.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:11188-13695:- | gene-YPL019C_SA1 | rna-NM_001183833.1_SA1 | cds-NP_015306.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:491993-494500:- | gene-YPL019C_ThermosaccDry | rna-NM_001183833.1_ThermosaccDry | cds-NP_015306.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:506880-509636:- | gene-YPL019C_VR1 | rna-NM_001183833.1_VR1 | cds-NP_015306.1_VR1 | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:491279-493786:- | gene-YPL019C_ZTW1 | rna-NM_001183833.1_ZTW1 | cds-NP_015306.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:491230-493737:- | gene-YPL019C_Sparadoxus | rna-NM_001183833.1_Sparadoxus | cds-NP_015306.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |