Gene name: VTC2
Reference locus (S288C): YFL004W
Gene biotype: protein_coding
Description: Regulatory subunit of the vacuolar transporter chaperone (VTC) complex; involved in membrane trafficking, vacuolar polyphosphate accumulation, microautophagy and non-autophagic vacuolar fusion; VTC2 has a paralog, VTC3, that arose from the whole genome duplication; Belongs to the VTC2/3 family
Top 10 interactors (score): VTC5 (0.946); VTC3 (0.897); PHO81 (0.889); VTC1 (0.884); VTC4 (0.876); GDE1 (0.86); CCT6 (0.721); CCT3 (0.721); CCT5 (0.721); CCT2 (0.721); CCT4 (0.721); TCP1 (0.721); CCT7 (0.721); CCT8 (0.72); PPN1 (0.693); PHO84 (0.679); PHO8 (0.635); SPL2 (0.621); PHO91 (0.617); PHO11 (0.609)
Homologues (species, bitscore): XPR1 (Homo sapiens, 56.6); Xpr1 (Mus musculus, 56.2); xpr1 (Danio rerio, 58.5); xpr1 (Xenopus tropicalis, 55.8); CG7536 (Drosophila melanogaster, 56.2); Y39A1A.22 (Caenorhabditis elegans, 58.5); SPX2 (Arabidopsis thaliana, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:128220-130706:+ | gene-YFL004W_AKU4011 | rna-NM_001179962.1_AKU4011 | cds-NP_116651.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:13945-16431:+ | gene-YFL004W_BG1 | rna-NM_001179962.1_BG1 | cds-NP_116651.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:127787-130273:+ | gene-YFL004W_Bruggeman | rna-NM_001179962.1_Bruggeman | cds-NP_116651.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:133774-136260:+ | gene-YFL004W_CAT1 | rna-NM_001179962.1_CAT1 | cds-NP_116651.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:129045-131531:+ | gene-YFL004W_CBS1585 | rna-NM_001179962.1_CBS1585 | cds-NP_116651.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:103717-106203:+ | gene-YFL004W_CBS436 | rna-NM_001179962.1_CBS436 | cds-NP_116651.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:128786-131272:+ | gene-YFL004W_CBS6412 | rna-NM_001179962.1_CBS6412 | cds-NP_116651.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:131296-133782:+ | gene-YFL004W_CBS6413 | rna-NM_001179962.1_CBS6413 | cds-NP_116651.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:128095-130581:+ | gene-YFL004W_CENPK1137D | rna-NM_001179962.1_CENPK1137D | cds-NP_116651.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:127206-129692:+ | gene-YFL004W_EthanolRed | rna-NM_001179962.1_EthanolRed | cds-NP_116651.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:128853-131339:+ | gene-YFL004W_FaliES1 | rna-NM_001179962.1_FaliES1 | cds-NP_116651.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000450.1:13860-16346:+ | gene-YFL004W_JAY291 | rna-NM_001179962.1_JAY291 | cds-NP_116651.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:129417-131903:+ | gene-YFL004W_MUCL30387 | rna-NM_001179962.1_MUCL30387 | cds-NP_116651.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:127390-129876:+ | gene-YFL004W_MUCL30388 | rna-NM_001179962.1_MUCL30388 | cds-NP_116651.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:127489-129975:+ | gene-YFL004W_MUCL39482 | rna-NM_001179962.1_MUCL39482 | cds-NP_116651.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:126753-129239:+ | gene-YFL004W_MUCL42920 | rna-NM_001179962.1_MUCL42920 | cds-NP_116651.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:131809-134295:+ | gene-YFL004W_NCIM3186 | rna-NM_001179962.1_NCIM3186 | cds-NP_116651.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:128504-130990:+ | gene-YFL004W_NCYC1407 | rna-NM_001179962.1_NCYC1407 | cds-NP_116651.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:148394-150880:+ | gene-YFL004W_PE2H3 | rna-NM_001179962.1_PE2H3 | cds-NP_116651.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:147942-150428:+ | gene-YFL004W_PE2H4 | rna-NM_001179962.1_PE2H4 | cds-NP_116651.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:131810-134296:+ | gene-YFL004W_S288C | rna-NM_001179962.1_S288C | cds-NP_116651.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:183141-185627:- | gene-YFL004W_SA1 | rna-NM_001179962.1_SA1 | cds-NP_116651.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:128013-130499:+ | gene-YFL004W_ThermosaccDry | rna-NM_001179962.1_ThermosaccDry | cds-NP_116651.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:137904-140390:+ | gene-YFL004W_VR1 | rna-NM_001179962.1_VR1 | cds-NP_116651.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:58462-60948:+ | gene-YFL004W_ZTW1 | rna-NM_001179962.1_ZTW1 | cds-NP_116651.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:152524-155010:+ | gene-YFL004W_Sparadoxus | rna-NM_001179962.1_Sparadoxus | cds-NP_116651.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |