Gene name: VTC1
Reference locus (S288C): YER072W
Gene biotype: protein_coding
Description: Regulatory subunit of the vacuolar transporter chaperone (VTC) complex; VTC complex is involved in membrane trafficking, vacuolar polyphosphate accumulation, microautophagy and non-autophagic vacuolar fusion; also has mRNA binding activity; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): VTC3 (0.989); VTC4 (0.97); PHO84 (0.97); VTC5 (0.951); SPL2 (0.947); PHO12 (0.917); VTC2 (0.884); PHO11 (0.846); GDE1 (0.805); PHO81 (0.765); PHO89 (0.729); CCT5 (0.721); CCT4 (0.721); CCT2 (0.721); CCT7 (0.721); CCT3 (0.721); CCT6 (0.721); TCP1 (0.721); CCT8 (0.72); IRC23 (0.715)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:296588-296977:+ | gene-YER072W_AKU4011 | rna-NM_001178963.1_AKU4011 | cds-NP_010995.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:128806-129195:- | gene-YER072W_BG1 | rna-NM_001178963.1_BG1 | cds-NP_010995.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:306182-306571:+ | gene-YER072W_Bruggeman | rna-NM_001178963.1_Bruggeman | cds-NP_010995.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:300033-300422:+ | gene-YER072W_CAT1 | rna-NM_001178963.1_CAT1 | cds-NP_010995.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:296439-296828:+ | gene-YER072W_CBS1585 | rna-NM_001178963.1_CBS1585 | cds-NP_010995.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:298591-298980:+ | gene-YER072W_CBS436 | rna-NM_001178963.1_CBS436 | cds-NP_010995.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:295909-296298:+ | gene-YER072W_CBS6412 | rna-NM_001178963.1_CBS6412 | cds-NP_010995.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:301920-302309:+ | gene-YER072W_CBS6413 | rna-NM_001178963.1_CBS6413 | cds-NP_010995.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:300634-301023:+ | gene-YER072W_CENPK1137D | rna-NM_001178963.1_CENPK1137D | cds-NP_010995.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:296925-297314:+ | gene-YER072W_EthanolRed | rna-NM_001178963.1_EthanolRed | cds-NP_010995.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:297377-297766:+ | gene-YER072W_FaliES1 | rna-NM_001178963.1_FaliES1 | cds-NP_010995.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:12437-12826:+ | gene-YER072W_JAY291 | rna-NM_001178963.1_JAY291 | cds-NP_010995.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:301580-301969:+ | gene-YER072W_MUCL30387 | rna-NM_001178963.1_MUCL30387 | cds-NP_010995.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:297250-297639:+ | gene-YER072W_MUCL30388 | rna-NM_001178963.1_MUCL30388 | cds-NP_010995.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:295474-295863:+ | gene-YER072W_MUCL39482 | rna-NM_001178963.1_MUCL39482 | cds-NP_010995.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:302715-303104:+ | gene-YER072W_MUCL42920 | rna-NM_001178963.1_MUCL42920 | cds-NP_010995.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:302805-303194:+ | gene-YER072W_NCIM3186 | rna-NM_001178963.1_NCIM3186 | cds-NP_010995.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:300541-300930:+ | gene-YER072W_NCYC1407 | rna-NM_001178963.1_NCYC1407 | cds-NP_010995.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:311187-311576:+ | gene-YER072W_PE2H3 | rna-NM_001178963.1_PE2H3 | cds-NP_010995.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:301128-301517:+ | gene-YER072W_PE2H4 | rna-NM_001178963.1_PE2H4 | cds-NP_010995.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:302806-303195:+ | gene-YER072W_S288C | rna-NM_001178963.1_S288C | cds-NP_010995.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:12448-12837:+ | gene-YER072W_SA1 | rna-NM_001178963.1_SA1 | cds-NP_010995.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:298173-298562:+ | gene-YER072W_ThermosaccDry | rna-NM_001178963.1_ThermosaccDry | cds-NP_010995.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:298871-299260:+ | gene-YER072W_VR1 | rna-NM_001178963.1_VR1 | cds-NP_010995.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:295341-295730:+ | gene-YER072W_ZTW1 | rna-NM_001178963.1_ZTW1 | cds-NP_010995.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:298703-299092:+ | gene-YER072W_Sparadoxus | rna-NM_001178963.1_Sparadoxus | cds-NP_010995.1_Sparadoxus | 94.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |