Gene name: VSB1
Reference locus (S288C): YGR125W
Gene biotype: protein_coding
Description: Uncharacterized vacuolar membrane protein YGR125W; Putative protein of unknown function; deletion mutant has decreased rapamycin resistance but normal wormannin resistance; green fluorescent protein (GFP)-fusion protein localizes to the vacuole
Top 10 interactors (score): SUL2 (0.979); SUL1 (0.918); YDR250C (0.905); YGR045C (0.896); SLC1 (0.863); DDI2 (0.849); VPS62 (0.811); YIL166C (0.787); DDI3 (0.748); RPA34 (0.715); RSM24 (0.699); IMH1 (0.692); MXR2 (0.678); IMA2 (0.672); IRC15 (0.658); NUG1 (0.639); RAV1 (0.635); YAL065C (0.62); FAU1 (0.586); YER158C (0.575)
Homologues (species, bitscore): LOC100498507 (Xenopus tropicalis, 65.9); SULTR3;5 (Arabidopsis thaliana, 63.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:721321-724431:+ | gene-YGR125W_AKU4011 | rna-NM_001181254.1_AKU4011 | cds-NP_011641.1_AKU4011 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:145-3255:+ | gene-YGR125W_BG1 | rna-NM_001181254.1_BG1 | cds-NP_011641.1_BG1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:724113-727223:+ | gene-YGR125W_Bruggeman | rna-NM_001181254.1_Bruggeman | cds-NP_011641.1_Bruggeman | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:722778-725888:+ | gene-YGR125W_CAT1 | rna-NM_001181254.1_CAT1 | cds-NP_011641.1_CAT1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:722304-725414:+ | gene-YGR125W_CBS1585 | rna-NM_001181254.1_CBS1585 | cds-NP_011641.1_CBS1585 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:725682-728792:+ | gene-YGR125W_CBS436 | rna-NM_001181254.1_CBS436 | cds-NP_011641.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:713979-717089:+ | gene-YGR125W_CBS6412 | rna-NM_001181254.1_CBS6412 | cds-NP_011641.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:718913-722023:+ | gene-YGR125W_CBS6413 | rna-NM_001181254.1_CBS6413 | cds-NP_011641.1_CBS6413 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:742041-745149:+ | gene-YGR125W_CENPK1137D | rna-NM_001181254.1_CENPK1137D | cds-NP_011641.1_CENPK1137D | 98.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:708345-711455:+ | gene-YGR125W_EthanolRed | rna-NM_001181254.1_EthanolRed | cds-NP_011641.1_EthanolRed | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:712206-715316:+ | gene-YGR125W_FaliES1 | rna-NM_001181254.1_FaliES1 | cds-NP_011641.1_FaliES1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:18546-21656:- | gene-YGR125W_JAY291 | rna-NM_001181254.1_JAY291 | cds-NP_011641.1_JAY291 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:831253-834363:+ | gene-YGR125W_MUCL30387 | rna-NM_001181254.1_MUCL30387 | cds-NP_011641.1_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:724128-727238:+ | gene-YGR125W_MUCL30388 | rna-NM_001181254.1_MUCL30388 | cds-NP_011641.1_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:718030-721140:+ | gene-YGR125W_MUCL39482 | rna-NM_001181254.1_MUCL39482 | cds-NP_011641.1_MUCL39482 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:728127-731237:+ | gene-YGR125W_MUCL42920 | rna-NM_001181254.1_MUCL42920 | cds-NP_011641.1_MUCL42920 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:742325-745435:+ | gene-YGR125W_NCIM3186 | rna-NM_001181254.1_NCIM3186 | cds-NP_011641.1_NCIM3186 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:712731-715841:+ | gene-YGR125W_NCYC1407 | rna-NM_001181254.1_NCYC1407 | cds-NP_011641.1_NCYC1407 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:732554-735664:+ | gene-YGR125W_PE2H3 | rna-NM_001181254.1_PE2H3 | cds-NP_011641.1_PE2H3 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:737664-740774:+ | gene-YGR125W_PE2H4 | rna-NM_001181254.1_PE2H4 | cds-NP_011641.1_PE2H4 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:742325-745435:+ | gene-YGR125W_S288C | rna-NM_001181254.1_S288C | cds-NP_011641.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:163478-166588:+ | gene-YGR125W_SA1 | rna-NM_001181254.1_SA1 | cds-NP_011641.1_SA1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:732829-735939:+ | gene-YGR125W_ThermosaccDry | rna-NM_001181254.1_ThermosaccDry | cds-NP_011641.1_ThermosaccDry | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:836334-839444:+ | gene-YGR125W_VR1 | rna-NM_001181254.1_VR1 | cds-NP_011641.1_VR1 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:34975-38085:+ | gene-YGR125W_ZTW1 | rna-NM_001181254.1_ZTW1 | cds-NP_011641.1_ZTW1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:722559-725669:+ | gene-YGR125W_Sparadoxus | rna-NM_001181254.1_Sparadoxus | cds-NP_011641.1_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |