Gene name: VRG4
Reference locus (S288C): YGL225W
Gene biotype: protein_coding
Description: Golgi GDP-mannose transporter; regulates Golgi function and glycosylation in Golgi; VRG4 has a paralog, HVG1, that arose from the whole genome duplication; Belongs to the TPT transporter family. SLC35D subfamily
Top 10 interactors (score): YMD8 (0.891); YEA4 (0.886); HUT1 (0.88); DPM1 (0.831); SEC7 (0.814); ELO3 (0.807); ALG11 (0.803); ELO2 (0.793); MNN9 (0.762); VAN1 (0.748); GYP1 (0.72); PMT4 (0.701); GDA1 (0.697); SCS7 (0.69); MNS1 (0.671); RUD3 (0.666); THI74 (0.633); KRE5 (0.622); COG1 (0.617); GEA1 (0.616)
Homologues (species, bitscore): TMEM241 (Homo sapiens, 64.3); Tmem241 (Mus musculus, 63.9); GONST1 (Arabidopsis thaliana, 146.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:78169-79182:+ | gene-YGL225W_AKU4011 | rna-NM_001181090.1_AKU4011 | cds-NP_011290.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:71332-72345:+ | gene-YGL225W_BG1 | rna-NM_001181090.1_BG1 | cds-NP_011290.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:78767-79780:+ | gene-YGL225W_Bruggeman | rna-NM_001181090.1_Bruggeman | cds-NP_011290.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:77453-78466:+ | gene-YGL225W_CAT1 | rna-NM_001181090.1_CAT1 | cds-NP_011290.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:82451-83464:+ | gene-YGL225W_CBS1585 | rna-NM_001181090.1_CBS1585 | cds-NP_011290.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:78130-79143:+ | gene-YGL225W_CBS436 | rna-NM_001181090.1_CBS436 | cds-NP_011290.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:70021-71034:+ | gene-YGL225W_CBS6412 | rna-NM_001181090.1_CBS6412 | cds-NP_011290.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:76313-77326:+ | gene-YGL225W_CBS6413 | rna-NM_001181090.1_CBS6413 | cds-NP_011290.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:76926-77939:+ | gene-YGL225W_CENPK1137D | rna-NM_001181090.1_CENPK1137D | cds-NP_011290.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:69254-70267:+ | gene-YGL225W_EthanolRed | rna-NM_001181090.1_EthanolRed | cds-NP_011290.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:69839-70852:+ | gene-YGL225W_FaliES1 | rna-NM_001181090.1_FaliES1 | cds-NP_011290.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000328.1:2623-3636:- | gene-YGL225W_JAY291 | rna-NM_001181090.1_JAY291 | cds-NP_011290.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:78695-79708:+ | gene-YGL225W_MUCL30387 | rna-NM_001181090.1_MUCL30387 | cds-NP_011290.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:80858-81871:+ | gene-YGL225W_MUCL30388 | rna-NM_001181090.1_MUCL30388 | cds-NP_011290.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:79048-80061:+ | gene-YGL225W_MUCL39482 | rna-NM_001181090.1_MUCL39482 | cds-NP_011290.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:82178-83191:+ | gene-YGL225W_MUCL42920 | rna-NM_001181090.1_MUCL42920 | cds-NP_011290.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:76894-77907:+ | gene-YGL225W_NCIM3186 | rna-NM_001181090.1_NCIM3186 | cds-NP_011290.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:70808-71821:+ | gene-YGL225W_NCYC1407 | rna-NM_001181090.1_NCYC1407 | cds-NP_011290.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:73619-74632:+ | gene-YGL225W_PE2H3 | rna-NM_001181090.1_PE2H3 | cds-NP_011290.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:73167-74180:+ | gene-YGL225W_PE2H4 | rna-NM_001181090.1_PE2H4 | cds-NP_011290.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:76894-77907:+ | gene-YGL225W_S288C | rna-NM_001181090.1_S288C | cds-NP_011290.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:297409-298422:- | gene-YGL225W_SA1 | rna-NM_001181090.1_SA1 | cds-NP_011290.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:70145-71158:+ | gene-YGL225W_ThermosaccDry | rna-NM_001181090.1_ThermosaccDry | cds-NP_011290.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:78061-79074:+ | gene-YGL225W_VR1 | rna-NM_001181090.1_VR1 | cds-NP_011290.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:69187-70200:+ | gene-YGL225W_ZTW1 | rna-NM_001181090.1_ZTW1 | cds-NP_011290.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:76271-77284:+ | gene-YGL225W_Sparadoxus | rna-NM_001181090.1_Sparadoxus | cds-NP_011290.1_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |