Gene name: VPS8
Reference locus (S288C): YAL002W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 8; Membrane-binding component of the CORVET complex; involved in endosomal vesicle tethering and fusion in the endosome to vacuole protein targeting pathway; interacts with Vps21p; contains RING finger motif
Top 10 interactors (score): PEP5 (0.999); VPS16 (0.999); YPT52 (0.999); PEP3 (0.999); VPS3 (0.999); VAM6 (0.999); VPS33 (0.999); VPS21 (0.999); VPS41 (0.993); YPT7 (0.97); VPS45 (0.966); YPT53 (0.934); VPS36 (0.933); MON1 (0.927); PEP7 (0.918); PEP12 (0.916); PEP8 (0.906); VAM3 (0.905); DNF3 (0.896); JJJ1 (0.896)
Homologues (species, bitscore): VPS8 (Homo sapiens, 89.4); Vps8 (Mus musculus, 90.9); vps8 (Danio rerio, 100.5); vps8 (Xenopus tropicalis, 88.6); CG10144 (Drosophila melanogaster, 69.7); C42C1.4 (Caenorhabditis elegans, 61.6); SETH5 (Arabidopsis thaliana, 74.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:129135-132959:+ | gene-YAL002W_AKU4011 | rna-NM_001178149.1_AKU4011 | cds-NP_009399.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000200.1:4572-8396:- | gene-YAL002W_BG1 | rna-NM_001178149.1_BG1 | cds-NP_009399.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:143940-147764:+ | gene-YAL002W_Bruggeman | rna-NM_001178149.1_Bruggeman | cds-NP_009399.2_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:130523-134347:+ | gene-YAL002W_CAT1 | rna-NM_001178149.1_CAT1 | cds-NP_009399.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:141832-145656:+ | gene-YAL002W_CBS1585 | rna-NM_001178149.1_CBS1585 | cds-NP_009399.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:142142-145966:+ | gene-YAL002W_CBS436 | rna-NM_001178149.1_CBS436 | cds-NP_009399.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:754574-758398:+ | gene-YAL002W_CBS6412 | rna-NM_001178149.1_CBS6412 | cds-NP_009399.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:140101-143925:+ | gene-YAL002W_CBS6413 | rna-NM_001178149.1_CBS6413 | cds-NP_009399.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:143614-147438:+ | gene-YAL002W_CENPK1137D | rna-NM_001178149.1_CENPK1137D | cds-NP_009399.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:129695-133519:+ | gene-YAL002W_EthanolRed | rna-NM_001178149.1_EthanolRed | cds-NP_009399.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:145350-149174:+ | gene-YAL002W_FaliES1 | rna-NM_001178149.1_FaliES1 | cds-NP_009399.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000248.1:2724-6548:+ | gene-YAL002W_JAY291 | rna-NM_001178149.1_JAY291 | cds-NP_009399.2_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:144844-148668:+ | gene-YAL002W_MUCL30387 | rna-NM_001178149.1_MUCL30387 | cds-NP_009399.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:142341-146165:+ | gene-YAL002W_MUCL30388 | rna-NM_001178149.1_MUCL30388 | cds-NP_009399.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:141108-144932:+ | gene-YAL002W_MUCL39482 | rna-NM_001178149.1_MUCL39482 | cds-NP_009399.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:143240-147064:+ | gene-YAL002W_MUCL42920 | rna-NM_001178149.1_MUCL42920 | cds-NP_009399.2_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:143584-147408:+ | gene-YAL002W_NCIM3186 | rna-NM_001178149.1_NCIM3186 | cds-NP_009399.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:128496-132320:+ | gene-YAL002W_NCYC1407 | rna-NM_001178149.1_NCYC1407 | cds-NP_009399.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:130422-134246:+ | gene-YAL002W_PE2H3 | rna-NM_001178149.1_PE2H3 | cds-NP_009399.2_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:130141-133965:+ | gene-YAL002W_PE2H4 | rna-NM_001178149.1_PE2H4 | cds-NP_009399.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:143707-147531:+ | gene-YAL002W_S288C | rna-NM_001178149.1_S288C | cds-NP_009399.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000100.1:2439-6263:+ | gene-YAL002W_SA1 | rna-NM_001178149.1_SA1 | cds-NP_009399.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:144359-148183:+ | gene-YAL002W_ThermosaccDry | rna-NM_001178149.1_ThermosaccDry | cds-NP_009399.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:148913-152737:+ | gene-YAL002W_VR1 | rna-NM_001178149.1_VR1 | cds-NP_009399.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:116180-120004:+ | gene-YAL002W_ZTW1 | rna-NM_001178149.1_ZTW1 | cds-NP_009399.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:133743-137566:+ | gene-YAL002W_Sparadoxus | rna-NM_001178149.1_Sparadoxus | cds-NP_009399.2_Sparadoxus | 89.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |