Gene name: VPS73
Reference locus (S288C): YGL104C
Gene biotype: protein_coding
Description: Mitochondrial protein; mutation affects vacuolar protein sorting; putative transporter; member of the sugar porter family; VPS73 has a paralog, YBR241C, that arose from the whole genome duplication
Top 10 interactors (score): SEC4 (0.981); AAP1 (0.748); APE2 (0.748); TMA108 (0.748); SNC1 (0.683); SNC2 (0.683); FMP42 (0.671); CHC1 (0.653); CNL1 (0.653); RHO2 (0.632); RHO3 (0.632); RHO4 (0.632); RHO1 (0.632); YGR021W (0.63); NTH2 (0.621); RSR1 (0.607); BZZ1 (0.594); YNL320W (0.584); MRX3 (0.575); PTC4 (0.574)
Homologues (species, bitscore): SLC2A4 (Homo sapiens, 171.8); Slc2a4 (Mus musculus, 174.1); slc2a1a (Danio rerio, 178.7); slc2a2 (Xenopus tropicalis, 172.9); sut2 (Drosophila melanogaster, 144.8); fgt-1 (Caenorhabditis elegans, 144.8); AT2G48020 (Arabidopsis thaliana, 147.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:312022-313482:- | gene-YGL104C_AKU4011 | rna-NM_001180969.3_AKU4011 | cds-NP_011411.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:92228-93688:+ | gene-YGL104C_BG1 | rna-NM_001180969.3_BG1 | cds-NP_011411.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:314181-315641:- | gene-YGL104C_Bruggeman | rna-NM_001180969.3_Bruggeman | cds-NP_011411.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:309719-311179:- | gene-YGL104C_CAT1 | rna-NM_001180969.3_CAT1 | cds-NP_011411.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:315346-316806:- | gene-YGL104C_CBS1585 | rna-NM_001180969.3_CBS1585 | cds-NP_011411.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:309648-311108:- | gene-YGL104C_CBS436 | rna-NM_001180969.3_CBS436 | cds-NP_011411.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:300039-301499:- | gene-YGL104C_CBS6412 | rna-NM_001180969.3_CBS6412 | cds-NP_011411.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:309644-311104:- | gene-YGL104C_CBS6413 | rna-NM_001180969.3_CBS6413 | cds-NP_011411.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:308894-310354:- | gene-YGL104C_CENPK1137D | rna-NM_001180969.3_CENPK1137D | cds-NP_011411.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:301093-302553:- | gene-YGL104C_EthanolRed | rna-NM_001180969.3_EthanolRed | cds-NP_011411.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:303648-305108:- | gene-YGL104C_FaliES1 | rna-NM_001180969.3_FaliES1 | cds-NP_011411.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:41704-43164:+ | gene-YGL104C_JAY291 | rna-NM_001180969.3_JAY291 | cds-NP_011411.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:311151-312611:- | gene-YGL104C_MUCL30387 | rna-NM_001180969.3_MUCL30387 | cds-NP_011411.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:314235-315695:- | gene-YGL104C_MUCL30388 | rna-NM_001180969.3_MUCL30388 | cds-NP_011411.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:311859-313319:- | gene-YGL104C_MUCL39482 | rna-NM_001180969.3_MUCL39482 | cds-NP_011411.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:315133-316593:- | gene-YGL104C_MUCL42920 | rna-NM_001180969.3_MUCL42920 | cds-NP_011411.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:308713-310173:- | gene-YGL104C_NCIM3186 | rna-NM_001180969.3_NCIM3186 | cds-NP_011411.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:303349-304809:- | gene-YGL104C_NCYC1407 | rna-NM_001180969.3_NCYC1407 | cds-NP_011411.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:304754-306214:- | gene-YGL104C_PE2H3 | rna-NM_001180969.3_PE2H3 | cds-NP_011411.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:309752-311212:- | gene-YGL104C_PE2H4 | rna-NM_001180969.3_PE2H4 | cds-NP_011411.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:308713-310173:- | gene-YGL104C_S288C | rna-NM_001180969.3_S288C | cds-NP_011411.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:53498-54958:- | gene-YGL104C_SA1 | rna-NM_001180969.3_SA1 | cds-NP_011411.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:303860-305320:- | gene-YGL104C_ThermosaccDry | rna-NM_001180969.3_ThermosaccDry | cds-NP_011411.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:413471-414931:- | gene-YGL104C_VR1 | rna-NM_001180969.3_VR1 | cds-NP_011411.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:301259-302719:- | gene-YGL104C_ZTW1 | rna-NM_001180969.3_ZTW1 | cds-NP_011411.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:307658-309124:- | gene-YGL104C_Sparadoxus | rna-NM_001180969.3_Sparadoxus | cds-NP_011411.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |