Gene name: VPS72
Reference locus (S288C): YDR485C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 72; Htz1p-binding component of the SWR1 complex; exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; may function as a lock that prevents removal of H2AZ from nucleosomes; required for vacuolar protein sorting
Top 10 interactors (score): RVB1 (0.999); VPS71 (0.999); ARP6 (0.999); SWC5 (0.999); RVB2 (0.999); SWR1 (0.999); YAF9 (0.999); SWC4 (0.999); HTZ1 (0.999); BDF1 (0.996); SWC3 (0.996); SWC7 (0.995); ARP4 (0.988); EAF7 (0.988); ACT1 (0.987); TAF14 (0.967); NHP10 (0.967); IES4 (0.949); IES1 (0.948); IES3 (0.936)
Homologues (species, bitscore): YL-1 (Drosophila melanogaster, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1364742-1367129:- | gene-YDR485C_AKU4011 | rna-NM_001180793.3_AKU4011 | cds-NP_010773.4_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:6352-8739:- | gene-YDR485C_BG1 | rna-NM_001180793.3_BG1 | cds-NP_010773.4_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1396147-1398534:- | gene-YDR485C_Bruggeman | rna-NM_001180793.3_Bruggeman | cds-NP_010773.4_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1373298-1375685:- | gene-YDR485C_CAT1 | rna-NM_001180793.3_CAT1 | cds-NP_010773.4_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1359041-1361428:- | gene-YDR485C_CBS1585 | rna-NM_001180793.3_CBS1585 | cds-NP_010773.4_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1378399-1380786:- | gene-YDR485C_CBS436 | rna-NM_001180793.3_CBS436 | cds-NP_010773.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1354665-1357052:- | gene-YDR485C_CBS6412 | rna-NM_001180793.3_CBS6412 | cds-NP_010773.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1377676-1380063:- | gene-YDR485C_CBS6413 | rna-NM_001180793.3_CBS6413 | cds-NP_010773.4_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1423516-1425903:- | gene-YDR485C_CENPK1137D | rna-NM_001180793.3_CENPK1137D | cds-NP_010773.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1368081-1370468:- | gene-YDR485C_EthanolRed | rna-NM_001180793.3_EthanolRed | cds-NP_010773.4_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1371634-1374021:- | gene-YDR485C_FaliES1 | rna-NM_001180793.3_FaliES1 | cds-NP_010773.4_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:69887-72274:- | gene-YDR485C_JAY291 | rna-NM_001180793.3_JAY291 | cds-NP_010773.4_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1378640-1381027:- | gene-YDR485C_MUCL30387 | rna-NM_001180793.3_MUCL30387 | cds-NP_010773.4_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1360665-1363052:- | gene-YDR485C_MUCL30388 | rna-NM_001180793.3_MUCL30388 | cds-NP_010773.4_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1350526-1352913:- | gene-YDR485C_MUCL39482 | rna-NM_001180793.3_MUCL39482 | cds-NP_010773.4_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1293315-1295702:- | gene-YDR485C_MUCL42920 | rna-NM_001180793.3_MUCL42920 | cds-NP_010773.4_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1424743-1427130:- | gene-YDR485C_NCIM3186 | rna-NM_001180793.3_NCIM3186 | cds-NP_010773.4_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1364295-1366682:- | gene-YDR485C_NCYC1407 | rna-NM_001180793.3_NCYC1407 | cds-NP_010773.4_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1375154-1377541:- | gene-YDR485C_PE2H3 | rna-NM_001180793.3_PE2H3 | cds-NP_010773.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1380728-1383115:- | gene-YDR485C_PE2H4 | rna-NM_001180793.3_PE2H4 | cds-NP_010773.4_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1424820-1427207:- | gene-YDR485C_S288C | rna-NM_001180793.3_S288C | cds-NP_010773.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:189939-192326:+ | gene-YDR485C_SA1 | rna-NM_001180793.3_SA1 | cds-NP_010773.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1375856-1378243:- | gene-YDR485C_ThermosaccDry | rna-NM_001180793.3_ThermosaccDry | cds-NP_010773.4_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1391599-1393986:- | gene-YDR485C_VR1 | rna-NM_001180793.3_VR1 | cds-NP_010773.4_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:418523-420910:- | gene-YDR485C_ZTW1 | rna-NM_001180793.3_ZTW1 | cds-NP_010773.4_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1378660-1381062:- | gene-YDR485C_Sparadoxus | rna-NM_001180793.3_Sparadoxus | cds-NP_010773.4_Sparadoxus | 85.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |