Gene name: VPS71
Reference locus (S288C): YML041C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 71; Nucleosome-binding component of the SWR1 complex; SWR1 exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for vacuolar protein sorting
Top 10 interactors (score): RVB2 (0.999); RVB1 (0.999); ARP6 (0.999); SWR1 (0.999); SWC4 (0.999); VPS72 (0.999); SWC5 (0.998); YAF9 (0.997); SWC7 (0.996); SWC3 (0.996); HTZ1 (0.996); BDF1 (0.989); ARP4 (0.987); ACT1 (0.985); IES3 (0.973); NHP10 (0.968); TAF14 (0.955); HTA1 (0.951); IES4 (0.944); INO80 (0.925)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:250306-251148:- | gene-YML041C_AKU4011 | rna-NM_001182399.1_AKU4011 | cds-NP_013671.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:292266-293108:+ | gene-YML041C_BG1 | rna-NM_001182399.1_BG1 | cds-NP_013671.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:190207-191049:- | gene-YML041C_Bruggeman | rna-NM_001182399.1_Bruggeman | cds-NP_013671.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:192757-193599:- | gene-YML041C_CAT1 | rna-NM_001182399.1_CAT1 | cds-NP_013671.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:183261-184103:- | gene-YML041C_CBS1585 | rna-NM_001182399.1_CBS1585 | cds-NP_013671.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:188772-189614:- | gene-YML041C_CBS436 | rna-NM_001182399.1_CBS436 | cds-NP_013671.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:296994-297836:- | gene-YML041C_CBS6412 | rna-NM_001182399.1_CBS6412 | cds-NP_013671.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:182513-183355:- | gene-YML041C_CBS6413 | rna-NM_001182399.1_CBS6413 | cds-NP_013671.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:195216-196058:- | gene-YML041C_CENPK1137D | rna-NM_001182399.1_CENPK1137D | cds-NP_013671.1_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:183259-184101:- | gene-YML041C_EthanolRed | rna-NM_001182399.1_EthanolRed | cds-NP_013671.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:186223-187065:- | gene-YML041C_FaliES1 | rna-NM_001182399.1_FaliES1 | cds-NP_013671.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:25070-25912:+ | gene-YML041C_JAY291 | rna-NM_001182399.1_JAY291 | cds-NP_013671.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:187942-188784:- | gene-YML041C_MUCL30387 | rna-NM_001182399.1_MUCL30387 | cds-NP_013671.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:191953-192795:- | gene-YML041C_MUCL30388 | rna-NM_001182399.1_MUCL30388 | cds-NP_013671.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:183541-184383:- | gene-YML041C_MUCL39482 | rna-NM_001182399.1_MUCL39482 | cds-NP_013671.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:189045-189887:- | gene-YML041C_MUCL42920 | rna-NM_001182399.1_MUCL42920 | cds-NP_013671.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:194867-195709:- | gene-YML041C_NCIM3186 | rna-NM_001182399.1_NCIM3186 | cds-NP_013671.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:183484-184326:- | gene-YML041C_NCYC1407 | rna-NM_001182399.1_NCYC1407 | cds-NP_013671.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:189364-190206:- | gene-YML041C_PE2H3 | rna-NM_001182399.1_PE2H3 | cds-NP_013671.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:195459-196301:- | gene-YML041C_PE2H4 | rna-NM_001182399.1_PE2H4 | cds-NP_013671.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:194913-195755:- | gene-YML041C_S288C | rna-NM_001182399.1_S288C | cds-NP_013671.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:37316-38158:+ | gene-YML041C_SA1 | rna-NM_001182399.1_SA1 | cds-NP_013671.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:183296-184138:- | gene-YML041C_ThermosaccDry | rna-NM_001182399.1_ThermosaccDry | cds-NP_013671.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:187305-188147:- | gene-YML041C_VR1 | rna-NM_001182399.1_VR1 | cds-NP_013671.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:162373-163215:- | gene-YML041C_ZTW1 | rna-NM_001182399.1_ZTW1 | cds-NP_013671.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:193868-194710:- | gene-YML041C_Sparadoxus | rna-NM_001182399.1_Sparadoxus | cds-NP_013671.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |