Gene name: VPS70
Reference locus (S288C): YJR126C
Gene biotype: protein_coding
Description: Protein of unknown function involved in vacuolar protein sorting; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; Belongs to the peptidase M28 family. M28B subfamily
Top 10 interactors (score): PRT1 (0.811); MEX67 (0.764); MKT1 (0.744); SWS2 (0.701); INM2 (0.7); RIE1 (0.699); RSF2 (0.68); APJ1 (0.651); ENT3 (0.644); KOG1 (0.643); MDS3 (0.617); IKS1 (0.61); FDC1 (0.573); PAD1 (0.569); AGP2 (0.555); LEU9 (0.541); CSE1 (0.533); RMR1 (0.453); CDC53 (0.408); LEU4 (0.403)
Homologues (species, bitscore): NAALAD2 (Homo sapiens, 196.8); Naalad2 (Mus musculus, 192.2); naalad2 (Danio rerio, 172.9); naalad2 (Xenopus tropicalis, 194.5); R57.1 (Caenorhabditis elegans, 152.5); AT5G19740 (Arabidopsis thaliana, 241.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:627751-630186:- | gene-YJR126C_AKU4011 | rna-NM_001181784.1_AKU4011 | cds-NP_012660.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:43396-45831:+ | gene-YJR126C_BG1 | rna-NM_001181784.1_BG1 | cds-NP_012660.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:643463-645904:- | gene-YJR126C_Bruggeman | rna-NM_001181784.1_Bruggeman | cds-NP_012660.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:648136-650571:- | gene-YJR126C_CAT1 | rna-NM_001181784.1_CAT1 | cds-NP_012660.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:639793-642228:- | gene-YJR126C_CBS1585 | rna-NM_001181784.1_CBS1585 | cds-NP_012660.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:658666-661103:- | gene-YJR126C_CBS436 | rna-NM_001181784.1_CBS436 | cds-NP_012660.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:626569-629004:- | gene-YJR126C_CBS6412 | rna-NM_001181784.1_CBS6412 | cds-NP_012660.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:629224-631659:- | gene-YJR126C_CBS6413 | rna-NM_001181784.1_CBS6413 | cds-NP_012660.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:638612-641047:- | gene-YJR126C_CENPK1137D | rna-NM_001181784.1_CENPK1137D | cds-NP_012660.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:632166-634601:- | gene-YJR126C_EthanolRed | rna-NM_001181784.1_EthanolRed | cds-NP_012660.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:643629-646064:- | gene-YJR126C_FaliES1 | rna-NM_001181784.1_FaliES1 | cds-NP_012660.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:43069-45504:+ | gene-YJR126C_JAY291 | rna-NM_001181784.1_JAY291 | cds-NP_012660.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:642256-644691:- | gene-YJR126C_MUCL30387 | rna-NM_001181784.1_MUCL30387 | cds-NP_012660.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:639981-642422:- | gene-YJR126C_MUCL30388 | rna-NM_001181784.1_MUCL30388 | cds-NP_012660.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:633275-635710:- | gene-YJR126C_MUCL39482 | rna-NM_001181784.1_MUCL39482 | cds-NP_012660.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:638014-640449:- | gene-YJR126C_MUCL42920 | rna-NM_001181784.1_MUCL42920 | cds-NP_012660.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:656233-658668:- | gene-YJR126C_NCIM3186 | rna-NM_001181784.1_NCIM3186 | cds-NP_012660.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:630826-633261:- | gene-YJR126C_NCYC1407 | rna-NM_001181784.1_NCYC1407 | cds-NP_012660.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:649016-651451:- | gene-YJR126C_PE2H3 | rna-NM_001181784.1_PE2H3 | cds-NP_012660.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:642705-645140:- | gene-YJR126C_PE2H4 | rna-NM_001181784.1_PE2H4 | cds-NP_012660.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:656254-658689:- | gene-YJR126C_S288C | rna-NM_001181784.1_S288C | cds-NP_012660.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:43442-45877:+ | gene-YJR126C_SA1 | rna-NM_001181784.1_SA1 | cds-NP_012660.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:637560-639995:- | gene-YJR126C_ThermosaccDry | rna-NM_001181784.1_ThermosaccDry | cds-NP_012660.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:639939-642374:- | gene-YJR126C_VR1 | rna-NM_001181784.1_VR1 | cds-NP_012660.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:616911-619346:- | gene-YJR126C_ZTW1 | rna-NM_001181784.1_ZTW1 | cds-NP_012660.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:651197-653619:- | gene-YJR126C_Sparadoxus | rna-NM_001181784.1_Sparadoxus | cds-NP_012660.1_Sparadoxus | 90.5 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |