Gene name: VPS55
Reference locus (S288C): YJR044C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 55; Late endosomal protein involved in late endosome to vacuole transport; functional homolog of human obesity receptor gene-related protein (OB-RGRP)
Top 10 interactors (score): VPS68 (0.994); STV1 (0.731); PEP12 (0.704); EAF3 (0.703); ERG1 (0.695); TDA5 (0.674); YCR101C (0.672); YDR132C (0.67); YGL242C (0.67); YDL109C (0.653); MPO1 (0.65); UIP3 (0.645); DSD1 (0.618); POF1 (0.617); YLR108C (0.612); SWI1 (0.609); IME4 (0.609); TUB2 (0.587); HUR1 (0.585); VPH1 (0.58)
Homologues (species, bitscore): LEPROTL1 (Homo sapiens, 57.0); Leprotl1 (Mus musculus, 64.7); LEPROTL1 (Danio rerio, 63.2); leprot (Xenopus tropicalis, 50.8); BcDNA:RH04491 (Drosophila melanogaster, 51.6); C30B5.2 (Caenorhabditis elegans, 52.8); AT1G32410 (Arabidopsis thaliana, 60.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:490463-490885:- | gene-YJR044C_AKU4011 | rna-NM_001181702.3_AKU4011 | cds-NP_012578.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:122068-122490:+ | gene-YJR044C_BG1 | rna-NM_001181702.3_BG1 | cds-NP_012578.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:504501-504923:- | gene-YJR044C_Bruggeman | rna-NM_001181702.3_Bruggeman | cds-NP_012578.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:508431-508853:- | gene-YJR044C_CAT1 | rna-NM_001181702.3_CAT1 | cds-NP_012578.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:502042-502464:- | gene-YJR044C_CBS1585 | rna-NM_001181702.3_CBS1585 | cds-NP_012578.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:520992-521414:- | gene-YJR044C_CBS436 | rna-NM_001181702.3_CBS436 | cds-NP_012578.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:490248-490670:- | gene-YJR044C_CBS6412 | rna-NM_001181702.3_CBS6412 | cds-NP_012578.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:492493-492915:- | gene-YJR044C_CBS6413 | rna-NM_001181702.3_CBS6413 | cds-NP_012578.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:501133-501555:- | gene-YJR044C_CENPK1137D | rna-NM_001181702.3_CENPK1137D | cds-NP_012578.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:495393-495815:- | gene-YJR044C_EthanolRed | rna-NM_001181702.3_EthanolRed | cds-NP_012578.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:506610-507032:- | gene-YJR044C_FaliES1 | rna-NM_001181702.3_FaliES1 | cds-NP_012578.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000250.1:21459-21881:- | gene-YJR044C_JAY291 | rna-NM_001181702.3_JAY291 | cds-NP_012578.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:504811-505233:- | gene-YJR044C_MUCL30387 | rna-NM_001181702.3_MUCL30387 | cds-NP_012578.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:501358-501780:- | gene-YJR044C_MUCL30388 | rna-NM_001181702.3_MUCL30388 | cds-NP_012578.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:495502-495924:- | gene-YJR044C_MUCL39482 | rna-NM_001181702.3_MUCL39482 | cds-NP_012578.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:500765-501187:- | gene-YJR044C_MUCL42920 | rna-NM_001181702.3_MUCL42920 | cds-NP_012578.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:518742-519164:- | gene-YJR044C_NCIM3186 | rna-NM_001181702.3_NCIM3186 | cds-NP_012578.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:493345-493767:- | gene-YJR044C_NCYC1407 | rna-NM_001181702.3_NCYC1407 | cds-NP_012578.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:511681-512103:- | gene-YJR044C_PE2H3 | rna-NM_001181702.3_PE2H3 | cds-NP_012578.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:505377-505799:- | gene-YJR044C_PE2H4 | rna-NM_001181702.3_PE2H4 | cds-NP_012578.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:518763-519185:- | gene-YJR044C_S288C | rna-NM_001181702.3_S288C | cds-NP_012578.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:303606-304028:- | gene-YJR044C_SA1 | rna-NM_001181702.3_SA1 | cds-NP_012578.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:500298-500720:- | gene-YJR044C_ThermosaccDry | rna-NM_001181702.3_ThermosaccDry | cds-NP_012578.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:502780-503202:- | gene-YJR044C_VR1 | rna-NM_001181702.3_VR1 | cds-NP_012578.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:480184-480606:- | gene-YJR044C_ZTW1 | rna-NM_001181702.3_ZTW1 | cds-NP_012578.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:506413-506835:- | gene-YJR044C_Sparadoxus | rna-NM_001181702.3_Sparadoxus | cds-NP_012578.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |