Gene name: VPS54
Reference locus (S288C): YDR027C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 54; Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; potentially phosphorylated by Cdc28p; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p
Top 10 interactors (score): VPS53 (0.999); VPS52 (0.999); VPS51 (0.99); COG4 (0.982); COG8 (0.974); TLG1 (0.97); TLG2 (0.969); COG3 (0.962); VPS35 (0.954); COG6 (0.949); YPT6 (0.941); VPS45 (0.902); SNC1 (0.862); PEP5 (0.85); EXO70 (0.821); VPS16 (0.819); SEC6 (0.812); SEC5 (0.805); TIP20 (0.797); SEC15 (0.796)
Homologues (species, bitscore): Vps54 (Mus musculus, 50.1); vps54 (Danio rerio, 53.1); VPS54 (Arabidopsis thaliana, 74.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:480542-483211:- | gene-YDR027C_AKU4011 | rna-NM_001180335.1_AKU4011 | cds-NP_010310.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:66564-69233:+ | gene-YDR027C_BG1 | rna-NM_001180335.1_BG1 | cds-NP_010310.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:508809-511478:- | gene-YDR027C_Bruggeman | rna-NM_001180335.1_Bruggeman | cds-NP_010310.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:493885-496554:- | gene-YDR027C_CAT1 | rna-NM_001180335.1_CAT1 | cds-NP_010310.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:477131-479800:- | gene-YDR027C_CBS1585 | rna-NM_001180335.1_CBS1585 | cds-NP_010310.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:494147-496816:- | gene-YDR027C_CBS436 | rna-NM_001180335.1_CBS436 | cds-NP_010310.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:474043-476712:- | gene-YDR027C_CBS6412 | rna-NM_001180335.1_CBS6412 | cds-NP_010310.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:496320-498989:- | gene-YDR027C_CBS6413 | rna-NM_001180335.1_CBS6413 | cds-NP_010310.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:493614-496285:- | gene-YDR027C_CENPK1137D | rna-NM_001180335.1_CENPK1137D | cds-NP_010310.1_CENPK1137D | 94.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:488566-491235:- | gene-YDR027C_EthanolRed | rna-NM_001180335.1_EthanolRed | cds-NP_010310.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:494923-497592:- | gene-YDR027C_FaliES1 | rna-NM_001180335.1_FaliES1 | cds-NP_010310.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000042.1:15970-18639:+ | gene-YDR027C_JAY291 | rna-NM_001180335.1_JAY291 | cds-NP_010310.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:494393-497062:- | gene-YDR027C_MUCL30387 | rna-NM_001180335.1_MUCL30387 | cds-NP_010310.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:484854-487523:- | gene-YDR027C_MUCL30388 | rna-NM_001180335.1_MUCL30388 | cds-NP_010310.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:478499-481168:- | gene-YDR027C_MUCL39482 | rna-NM_001180335.1_MUCL39482 | cds-NP_010310.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:400183-402852:- | gene-YDR027C_MUCL42920 | rna-NM_001180335.1_MUCL42920 | cds-NP_010310.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:494572-497241:- | gene-YDR027C_NCIM3186 | rna-NM_001180335.1_NCIM3186 | cds-NP_010310.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:477932-480601:- | gene-YDR027C_NCYC1407 | rna-NM_001180335.1_NCYC1407 | cds-NP_010310.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:493053-495722:- | gene-YDR027C_PE2H3 | rna-NM_001180335.1_PE2H3 | cds-NP_010310.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:492358-495027:- | gene-YDR027C_PE2H4 | rna-NM_001180335.1_PE2H4 | cds-NP_010310.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:494649-497318:- | gene-YDR027C_S288C | rna-NM_001180335.1_S288C | cds-NP_010310.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:21818-24487:- | gene-YDR027C_SA1 | rna-NM_001180335.1_SA1 | cds-NP_010310.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:494401-497070:- | gene-YDR027C_ThermosaccDry | rna-NM_001180335.1_ThermosaccDry | cds-NP_010310.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:498992-501661:- | gene-YDR027C_VR1 | rna-NM_001180335.1_VR1 | cds-NP_010310.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:492297-494966:- | gene-YDR027C_ZTW1 | rna-NM_001180335.1_ZTW1 | cds-NP_010310.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:496762-499431:- | gene-YDR027C_Sparadoxus | rna-NM_001180335.1_Sparadoxus | cds-NP_010310.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |