Gene name: VPS52
Reference locus (S288C): YDR484W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 52; Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; involved in localization of actin and chitin; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p
Top 10 interactors (score): VPS53 (0.999); VPS54 (0.999); VPS51 (0.994); YPT6 (0.99); COG3 (0.968); COG8 (0.967); TLG1 (0.957); COG4 (0.945); COG6 (0.945); VPS45 (0.937); TLG2 (0.93); RGP1 (0.863); VPS35 (0.854); TRS33 (0.839); EXO70 (0.836); TRS85 (0.833); PEP5 (0.813); IMH1 (0.793); SEC5 (0.781); PEP8 (0.758)
Homologues (species, bitscore): VPS52 (Homo sapiens, 100.5); Vps52 (Mus musculus, 98.6); vps52 (Danio rerio, 102.8); vps52 (Xenopus tropicalis, 106.7); CG7371 (Drosophila melanogaster, 70.5); vps-52 (Caenorhabditis elegans, 60.1); POK (Arabidopsis thaliana, 130.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1362683-1364608:+ | gene-YDR484W_AKU4011 | rna-NM_001180792.1_AKU4011 | cds-NP_010772.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:4295-6220:+ | gene-YDR484W_BG1 | rna-NM_001180792.1_BG1 | cds-NP_010772.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1394090-1396015:+ | gene-YDR484W_Bruggeman | rna-NM_001180792.1_Bruggeman | cds-NP_010772.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1371239-1373164:+ | gene-YDR484W_CAT1 | rna-NM_001180792.1_CAT1 | cds-NP_010772.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1356982-1358907:+ | gene-YDR484W_CBS1585 | rna-NM_001180792.1_CBS1585 | cds-NP_010772.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1376340-1378265:+ | gene-YDR484W_CBS436 | rna-NM_001180792.1_CBS436 | cds-NP_010772.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1352606-1354531:+ | gene-YDR484W_CBS6412 | rna-NM_001180792.1_CBS6412 | cds-NP_010772.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1375617-1377542:+ | gene-YDR484W_CBS6413 | rna-NM_001180792.1_CBS6413 | cds-NP_010772.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1421459-1423384:+ | gene-YDR484W_CENPK1137D | rna-NM_001180792.1_CENPK1137D | cds-NP_010772.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1366022-1367947:+ | gene-YDR484W_EthanolRed | rna-NM_001180792.1_EthanolRed | cds-NP_010772.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1369575-1371500:+ | gene-YDR484W_FaliES1 | rna-NM_001180792.1_FaliES1 | cds-NP_010772.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:67831-69755:+ | gene-YDR484W_JAY291 | rna-NM_001180792.1_JAY291 | cds-NP_010772.1_JAY291 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1376581-1378506:+ | gene-YDR484W_MUCL30387 | rna-NM_001180792.1_MUCL30387 | cds-NP_010772.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1358608-1360533:+ | gene-YDR484W_MUCL30388 | rna-NM_001180792.1_MUCL30388 | cds-NP_010772.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1348467-1350392:+ | gene-YDR484W_MUCL39482 | rna-NM_001180792.1_MUCL39482 | cds-NP_010772.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1291256-1293181:+ | gene-YDR484W_MUCL42920 | rna-NM_001180792.1_MUCL42920 | cds-NP_010772.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1422686-1424611:+ | gene-YDR484W_NCIM3186 | rna-NM_001180792.1_NCIM3186 | cds-NP_010772.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1362236-1364161:+ | gene-YDR484W_NCYC1407 | rna-NM_001180792.1_NCYC1407 | cds-NP_010772.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1373097-1375022:+ | gene-YDR484W_PE2H3 | rna-NM_001180792.1_PE2H3 | cds-NP_010772.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1378671-1380596:+ | gene-YDR484W_PE2H4 | rna-NM_001180792.1_PE2H4 | cds-NP_010772.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1422763-1424688:+ | gene-YDR484W_S288C | rna-NM_001180792.1_S288C | cds-NP_010772.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:192458-194383:- | gene-YDR484W_SA1 | rna-NM_001180792.1_SA1 | cds-NP_010772.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1373797-1375722:+ | gene-YDR484W_ThermosaccDry | rna-NM_001180792.1_ThermosaccDry | cds-NP_010772.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1389542-1391467:+ | gene-YDR484W_VR1 | rna-NM_001180792.1_VR1 | cds-NP_010772.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:416464-418389:+ | gene-YDR484W_ZTW1 | rna-NM_001180792.1_ZTW1 | cds-NP_010772.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1376599-1378524:+ | gene-YDR484W_Sparadoxus | rna-NM_001180792.1_Sparadoxus | cds-NP_010772.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |