Gene name: VPS51
Reference locus (S288C): YKR020W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 51; Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; links the (VFT/GARP) complex to the SNARE Tlg1p; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p
Top 10 interactors (score): VPS52 (0.994); TLG1 (0.994); VPS54 (0.99); VPS53 (0.988); WHI3 (0.902); YPT6 (0.845); RGP1 (0.815); WHI5 (0.783); VPS61 (0.748); ATG8 (0.739); TAX4 (0.711); IMH1 (0.698); VPS16 (0.695); SNX4 (0.652); VPS35 (0.638); COG4 (0.618); VPS1 (0.614); COG5 (0.614); VPS65 (0.612); VPS45 (0.611)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:464007-464501:+ | gene-YKR020W_AKU4011 | rna-NM_001179810.1_AKU4011 | cds-NP_012945.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:178999-179493:- | gene-YKR020W_BG1 | rna-NM_001179810.1_BG1 | cds-NP_012945.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:485680-486174:+ | gene-YKR020W_Bruggeman | rna-NM_001179810.1_Bruggeman | cds-NP_012945.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:481421-481915:+ | gene-YKR020W_CAT1 | rna-NM_001179810.1_CAT1 | cds-NP_012945.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:476747-477241:+ | gene-YKR020W_CBS1585 | rna-NM_001179810.1_CBS1585 | cds-NP_012945.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:475578-476072:+ | gene-YKR020W_CBS436 | rna-NM_001179810.1_CBS436 | cds-NP_012945.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:460908-461402:+ | gene-YKR020W_CBS6412 | rna-NM_001179810.1_CBS6412 | cds-NP_012945.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:476575-477069:+ | gene-YKR020W_CBS6413 | rna-NM_001179810.1_CBS6413 | cds-NP_012945.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:478043-478537:+ | gene-YKR020W_CENPK1137D | rna-NM_001179810.1_CENPK1137D | cds-NP_012945.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:474475-474969:+ | gene-YKR020W_EthanolRed | rna-NM_001179810.1_EthanolRed | cds-NP_012945.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:477405-477899:+ | gene-YKR020W_FaliES1 | rna-NM_001179810.1_FaliES1 | cds-NP_012945.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:75857-76351:- | gene-YKR020W_JAY291 | rna-NM_001179810.1_JAY291 | cds-NP_012945.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:484996-485490:+ | gene-YKR020W_MUCL30387 | rna-NM_001179810.1_MUCL30387 | cds-NP_012945.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:480687-481181:+ | gene-YKR020W_MUCL30388 | rna-NM_001179810.1_MUCL30388 | cds-NP_012945.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:476064-476558:+ | gene-YKR020W_MUCL39482 | rna-NM_001179810.1_MUCL39482 | cds-NP_012945.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:481839-482333:+ | gene-YKR020W_MUCL42920 | rna-NM_001179810.1_MUCL42920 | cds-NP_012945.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:478327-478821:+ | gene-YKR020W_NCIM3186 | rna-NM_001179810.1_NCIM3186 | cds-NP_012945.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:476271-476765:+ | gene-YKR020W_NCYC1407 | rna-NM_001179810.1_NCYC1407 | cds-NP_012945.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:501259-501753:+ | gene-YKR020W_PE2H3 | rna-NM_001179810.1_PE2H3 | cds-NP_012945.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:485982-486476:+ | gene-YKR020W_PE2H4 | rna-NM_001179810.1_PE2H4 | cds-NP_012945.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:478338-478832:+ | gene-YKR020W_S288C | rna-NM_001179810.1_S288C | cds-NP_012945.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000078.1:34919-35413:- | gene-YKR020W_SA1 | rna-NM_001179810.1_SA1 | cds-NP_012945.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:476660-477154:+ | gene-YKR020W_ThermosaccDry | rna-NM_001179810.1_ThermosaccDry | cds-NP_012945.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:476279-476773:+ | gene-YKR020W_VR1 | rna-NM_001179810.1_VR1 | cds-NP_012945.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:474707-475201:+ | gene-YKR020W_ZTW1 | rna-NM_001179810.1_ZTW1 | cds-NP_012945.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:500149-500643:+ | gene-YKR020W_Sparadoxus | rna-NM_001179810.1_Sparadoxus | cds-NP_012945.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |