Gene name: VPS45
Reference locus (S288C): YGL095C
Gene biotype: protein_coding
Description: Protein of the Sec1p/Munc-18 family; essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment
Top 10 interactors (score): PEP7 (0.999); TLG2 (0.999); PEP12 (0.998); VTI1 (0.998); TLG1 (0.997); SEC1 (0.993); SED5 (0.991); VAM3 (0.99); PEP5 (0.988); YKT6 (0.987); SNC2 (0.986); VPS16 (0.985); PEP3 (0.982); SSO1 (0.981); SEC17 (0.973); VPS21 (0.967); VAM7 (0.967); VPS8 (0.966); SEC9 (0.957); SEC22 (0.947)
Homologues (species, bitscore): VPS45 (Homo sapiens, 366.7); Vps45 (Mus musculus, 369.0); vps45 (Danio rerio, 377.5); vps45 (Xenopus tropicalis, 252.7); Vps45 (Drosophila melanogaster, 345.9); vps-45 (Caenorhabditis elegans, 280.8); VPS45 (Arabidopsis thaliana, 340.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:331847-333580:- | gene-YGL095C_AKU4011 | rna-NM_001180960.3_AKU4011 | cds-NP_011420.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:71804-73540:+ | gene-YGL095C_BG1 | rna-NM_001180960.3_BG1 | cds-NP_011420.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:334339-336072:- | gene-YGL095C_Bruggeman | rna-NM_001180960.3_Bruggeman | cds-NP_011420.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:331232-332965:- | gene-YGL095C_CAT1 | rna-NM_001180960.3_CAT1 | cds-NP_011420.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:335172-336905:- | gene-YGL095C_CBS1585 | rna-NM_001180960.3_CBS1585 | cds-NP_011420.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:329456-331189:- | gene-YGL095C_CBS436 | rna-NM_001180960.3_CBS436 | cds-NP_011420.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:319553-321286:- | gene-YGL095C_CBS6412 | rna-NM_001180960.3_CBS6412 | cds-NP_011420.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:329478-331211:- | gene-YGL095C_CBS6413 | rna-NM_001180960.3_CBS6413 | cds-NP_011420.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:329061-330794:- | gene-YGL095C_CENPK1137D | rna-NM_001180960.3_CENPK1137D | cds-NP_011420.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:320932-322665:- | gene-YGL095C_EthanolRed | rna-NM_001180960.3_EthanolRed | cds-NP_011420.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:323493-325226:- | gene-YGL095C_FaliES1 | rna-NM_001180960.3_FaliES1 | cds-NP_011420.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:9133-10869:- | gene-YGL095C_JAY291 | rna-NM_001180960.3_JAY291 | cds-NP_011420.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:331316-333049:- | gene-YGL095C_MUCL30387 | rna-NM_001180960.3_MUCL30387 | cds-NP_011420.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:334302-336035:- | gene-YGL095C_MUCL30388 | rna-NM_001180960.3_MUCL30388 | cds-NP_011420.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:331700-333433:- | gene-YGL095C_MUCL39482 | rna-NM_001180960.3_MUCL39482 | cds-NP_011420.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:336227-337960:- | gene-YGL095C_MUCL42920 | rna-NM_001180960.3_MUCL42920 | cds-NP_011420.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:328874-330607:- | gene-YGL095C_NCIM3186 | rna-NM_001180960.3_NCIM3186 | cds-NP_011420.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:323235-324968:- | gene-YGL095C_NCYC1407 | rna-NM_001180960.3_NCYC1407 | cds-NP_011420.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:324899-326635:- | gene-YGL095C_PE2H3 | rna-NM_001180960.3_PE2H3 | cds-NP_011420.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:329899-331632:- | gene-YGL095C_PE2H4 | rna-NM_001180960.3_PE2H4 | cds-NP_011420.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:328874-330607:- | gene-YGL095C_S288C | rna-NM_001180960.3_S288C | cds-NP_011420.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000089.1:6256-7989:- | gene-YGL095C_SA1 | rna-NM_001180960.3_SA1 | cds-NP_011420.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:323746-325479:- | gene-YGL095C_ThermosaccDry | rna-NM_001180960.3_ThermosaccDry | cds-NP_011420.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:433607-435340:- | gene-YGL095C_VR1 | rna-NM_001180960.3_VR1 | cds-NP_011420.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:321100-322833:- | gene-YGL095C_ZTW1 | rna-NM_001180960.3_ZTW1 | cds-NP_011420.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:326825-328558:- | gene-YGL095C_Sparadoxus | rna-NM_001180960.3_Sparadoxus | cds-NP_011420.3_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |