Gene name: VPS38
Reference locus (S288C): YLR360W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 38; Part of a Vps34p phosphatidylinositol 3-kinase complex; functions in carboxypeptidase Y (CPY) sorting; binds Vps30p and Vps34p to promote production of phosphatidylinositol 3-phosphate (PtdIns3P) which stimulates kinase activity; required for overflow degradation of misfolded proteins when ERAD is saturated
Top 10 interactors (score): VPS30 (0.999); VPS15 (0.999); VPS34 (0.999); ATG14 (0.987); ATG18 (0.955); ATG38 (0.931); FAB1 (0.921); ATG8 (0.913); FIG4 (0.905); VAC7 (0.902); VAC14 (0.9); PRC1 (0.78); DCR2 (0.706); VPS5 (0.687); RGP1 (0.679); YPT7 (0.632); VPS8 (0.625); ARL1 (0.612); ATG9 (0.572); ATG21 (0.569)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:795648-796967:+ | gene-YLR360W_AKU4011 | rna-NM_001182249.3_AKU4011 | cds-NP_013464.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:27795-29114:+ | gene-YLR360W_BG1 | rna-NM_001182249.3_BG1 | cds-NP_013464.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:833967-835286:+ | gene-YLR360W_Bruggeman | rna-NM_001182249.3_Bruggeman | cds-NP_013464.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:829471-830790:+ | gene-YLR360W_CAT1 | rna-NM_001182249.3_CAT1 | cds-NP_013464.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:830640-831959:+ | gene-YLR360W_CBS1585 | rna-NM_001182249.3_CBS1585 | cds-NP_013464.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:814876-816195:+ | gene-YLR360W_CBS436 | rna-NM_001182249.3_CBS436 | cds-NP_013464.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:867647-868966:+ | gene-YLR360W_CBS6412 | rna-NM_001182249.3_CBS6412 | cds-NP_013464.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:831531-832850:+ | gene-YLR360W_CBS6413 | rna-NM_001182249.3_CBS6413 | cds-NP_013464.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:830804-832123:+ | gene-YLR360W_CENPK1137D | rna-NM_001182249.3_CENPK1137D | cds-NP_013464.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:788210-789529:+ | gene-YLR360W_EthanolRed | rna-NM_001182249.3_EthanolRed | cds-NP_013464.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:817015-818334:+ | gene-YLR360W_FaliES1 | rna-NM_001182249.3_FaliES1 | cds-NP_013464.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:27612-28931:+ | gene-YLR360W_JAY291 | rna-NM_001182249.3_JAY291 | cds-NP_013464.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:831382-832701:+ | gene-YLR360W_MUCL30387 | rna-NM_001182249.3_MUCL30387 | cds-NP_013464.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:837000-838319:+ | gene-YLR360W_MUCL30388 | rna-NM_001182249.3_MUCL30388 | cds-NP_013464.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:831859-833178:+ | gene-YLR360W_MUCL39482 | rna-NM_001182249.3_MUCL39482 | cds-NP_013464.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:827137-828456:+ | gene-YLR360W_MUCL42920 | rna-NM_001182249.3_MUCL42920 | cds-NP_013464.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:846077-847396:+ | gene-YLR360W_NCIM3186 | rna-NM_001182249.3_NCIM3186 | cds-NP_013464.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:841079-842398:+ | gene-YLR360W_NCYC1407 | rna-NM_001182249.3_NCYC1407 | cds-NP_013464.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:828033-829352:+ | gene-YLR360W_PE2H3 | rna-NM_001182249.3_PE2H3 | cds-NP_013464.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:827777-829096:+ | gene-YLR360W_PE2H4 | rna-NM_001182249.3_PE2H4 | cds-NP_013464.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:846103-847422:+ | gene-YLR360W_S288C | rna-NM_001182249.3_S288C | cds-NP_013464.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:201264-202583:- | gene-YLR360W_SA1 | rna-NM_001182249.3_SA1 | cds-NP_013464.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:819853-821172:+ | gene-YLR360W_ThermosaccDry | rna-NM_001182249.3_ThermosaccDry | cds-NP_013464.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:833119-834438:+ | gene-YLR360W_VR1 | rna-NM_001182249.3_VR1 | cds-NP_013464.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:157295-158614:+ | gene-YLR360W_ZTW1 | rna-NM_001182249.3_ZTW1 | cds-NP_013464.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:805911-807230:+ | gene-YLR360W_Sparadoxus | rna-NM_001182249.3_Sparadoxus | cds-NP_013464.3_Sparadoxus | 87.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |