Gene name: VPS36
Reference locus (S288C): YLR417W
Gene biotype: protein_coding
Description: Vacuolar protein-sorting-associated protein 36; Component of the ESCRT-II complex; contains the GLUE (GRAM Like Ubiquitin binding in EAP45) domain which is involved in interactions with ESCRT-I and ubiquitin-dependent sorting of proteins into the endosome; plays a role in the formation of mutant huntingtin (Htt) aggregates in yeast; Belongs to the VPS36 family
Top 10 interactors (score): SNF8 (0.999); VPS20 (0.999); DID4 (0.999); STP22 (0.999); VPS25 (0.999); VPS24 (0.999); VPS28 (0.999); SNF7 (0.999); VPS27 (0.998); MVB12 (0.997); SRN2 (0.991); HSE1 (0.986); DID2 (0.979); VPS60 (0.974); UBI4 (0.972); RPS31 (0.966); VPS4 (0.96); BRO1 (0.954); RIM20 (0.946); VPS8 (0.933)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:898561-900261:+ | gene-YLR417W_AKU4011 | rna-NM_001182305.3_AKU4011 | cds-NP_013521.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:130725-132425:+ | gene-YLR417W_BG1 | rna-NM_001182305.3_BG1 | cds-NP_013521.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:936867-938567:+ | gene-YLR417W_Bruggeman | rna-NM_001182305.3_Bruggeman | cds-NP_013521.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:932410-934110:+ | gene-YLR417W_CAT1 | rna-NM_001182305.3_CAT1 | cds-NP_013521.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:934157-935857:+ | gene-YLR417W_CBS1585 | rna-NM_001182305.3_CBS1585 | cds-NP_013521.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:917814-919514:+ | gene-YLR417W_CBS436 | rna-NM_001182305.3_CBS436 | cds-NP_013521.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:970198-971898:+ | gene-YLR417W_CBS6412 | rna-NM_001182305.3_CBS6412 | cds-NP_013521.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:934449-936149:+ | gene-YLR417W_CBS6413 | rna-NM_001182305.3_CBS6413 | cds-NP_013521.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:933858-935573:+ | gene-YLR417W_CENPK1137D | rna-NM_001182305.3_CENPK1137D | cds-NP_013521.3_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:891107-892807:+ | gene-YLR417W_EthanolRed | rna-NM_001182305.3_EthanolRed | cds-NP_013521.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:920417-922117:+ | gene-YLR417W_FaliES1 | rna-NM_001182305.3_FaliES1 | cds-NP_013521.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:73554-75254:+ | gene-YLR417W_JAY291 | rna-NM_001182305.3_JAY291 | cds-NP_013521.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:935732-937432:+ | gene-YLR417W_MUCL30387 | rna-NM_001182305.3_MUCL30387 | cds-NP_013521.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:941830-943530:+ | gene-YLR417W_MUCL30388 | rna-NM_001182305.3_MUCL30388 | cds-NP_013521.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:935377-937077:+ | gene-YLR417W_MUCL39482 | rna-NM_001182305.3_MUCL39482 | cds-NP_013521.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:930033-931733:+ | gene-YLR417W_MUCL42920 | rna-NM_001182305.3_MUCL42920 | cds-NP_013521.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:954984-956684:+ | gene-YLR417W_NCIM3186 | rna-NM_001182305.3_NCIM3186 | cds-NP_013521.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:944557-946257:+ | gene-YLR417W_NCYC1407 | rna-NM_001182305.3_NCYC1407 | cds-NP_013521.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:930935-932635:+ | gene-YLR417W_PE2H3 | rna-NM_001182305.3_PE2H3 | cds-NP_013521.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:930679-932379:+ | gene-YLR417W_PE2H4 | rna-NM_001182305.3_PE2H4 | cds-NP_013521.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:955010-956710:+ | gene-YLR417W_S288C | rna-NM_001182305.3_S288C | cds-NP_013521.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:97963-99663:- | gene-YLR417W_SA1 | rna-NM_001182305.3_SA1 | cds-NP_013521.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:923496-925196:+ | gene-YLR417W_ThermosaccDry | rna-NM_001182305.3_ThermosaccDry | cds-NP_013521.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:936025-937725:+ | gene-YLR417W_VR1 | rna-NM_001182305.3_VR1 | cds-NP_013521.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:260211-261911:+ | gene-YLR417W_ZTW1 | rna-NM_001182305.3_ZTW1 | cds-NP_013521.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:909047-910759:+ | gene-YLR417W_Sparadoxus | rna-NM_001182305.3_Sparadoxus | cds-NP_013521.3_Sparadoxus | 88.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |