Gene name: VPS33
Reference locus (S288C): YLR396C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 33; ATP-binding protein that is a subunit of the HOPS and CORVET complexes; essential for protein sorting, vesicle docking, and fusion at the vacuole; binds to SNARE domains
Top 10 interactors (score): VPS8 (0.999); VAM7 (0.999); VAM6 (0.999); VTI1 (0.999); VPS41 (0.999); PEP12 (0.999); PEP3 (0.999); YKT6 (0.999); VAM3 (0.999); YPT7 (0.999); NYV1 (0.999); VPS3 (0.999); VPS16 (0.999); PEP5 (0.999); SEC1 (0.991); SLY1 (0.976); YPT6 (0.975); YPT1 (0.975); SEC17 (0.97); YPT53 (0.97)
Homologues (species, bitscore): VPS33A (Homo sapiens, 144.8); Vps33a (Mus musculus, 141.7); ENSDARP00000098921 (Danio rerio, 136.7); vps33a (Xenopus tropicalis, 135.6); car (Drosophila melanogaster, 75.5); vps-33.1 (Caenorhabditis elegans, 66.2); ATVPS33 (Arabidopsis thaliana, 104.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:859771-861846:- | gene-YLR396C_AKU4011 | rna-NM_001182284.3_AKU4011 | cds-NP_013500.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:91917-93992:- | gene-YLR396C_BG1 | rna-NM_001182284.3_BG1 | cds-NP_013500.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:898076-900151:- | gene-YLR396C_Bruggeman | rna-NM_001182284.3_Bruggeman | cds-NP_013500.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:893603-895678:- | gene-YLR396C_CAT1 | rna-NM_001182284.3_CAT1 | cds-NP_013500.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:895367-897442:- | gene-YLR396C_CBS1585 | rna-NM_001182284.3_CBS1585 | cds-NP_013500.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:879008-881083:- | gene-YLR396C_CBS436 | rna-NM_001182284.3_CBS436 | cds-NP_013500.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:931408-933483:- | gene-YLR396C_CBS6412 | rna-NM_001182284.3_CBS6412 | cds-NP_013500.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:895658-897733:- | gene-YLR396C_CBS6413 | rna-NM_001182284.3_CBS6413 | cds-NP_013500.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:895046-897121:- | gene-YLR396C_CENPK1137D | rna-NM_001182284.3_CENPK1137D | cds-NP_013500.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:852314-854389:- | gene-YLR396C_EthanolRed | rna-NM_001182284.3_EthanolRed | cds-NP_013500.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:881624-883699:- | gene-YLR396C_FaliES1 | rna-NM_001182284.3_FaliES1 | cds-NP_013500.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:34781-36856:- | gene-YLR396C_JAY291 | rna-NM_001182284.3_JAY291 | cds-NP_013500.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:896942-899017:- | gene-YLR396C_MUCL30387 | rna-NM_001182284.3_MUCL30387 | cds-NP_013500.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:903028-905103:- | gene-YLR396C_MUCL30388 | rna-NM_001182284.3_MUCL30388 | cds-NP_013500.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:896587-898662:- | gene-YLR396C_MUCL39482 | rna-NM_001182284.3_MUCL39482 | cds-NP_013500.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:891243-893318:- | gene-YLR396C_MUCL42920 | rna-NM_001182284.3_MUCL42920 | cds-NP_013500.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:910209-912284:- | gene-YLR396C_NCIM3186 | rna-NM_001182284.3_NCIM3186 | cds-NP_013500.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:905767-907842:- | gene-YLR396C_NCYC1407 | rna-NM_001182284.3_NCYC1407 | cds-NP_013500.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:892161-894236:- | gene-YLR396C_PE2H3 | rna-NM_001182284.3_PE2H3 | cds-NP_013500.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:891905-893980:- | gene-YLR396C_PE2H4 | rna-NM_001182284.3_PE2H4 | cds-NP_013500.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:910235-912310:- | gene-YLR396C_S288C | rna-NM_001182284.3_S288C | cds-NP_013500.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:136378-138453:+ | gene-YLR396C_SA1 | rna-NM_001182284.3_SA1 | cds-NP_013500.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:884703-886778:- | gene-YLR396C_ThermosaccDry | rna-NM_001182284.3_ThermosaccDry | cds-NP_013500.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:897251-899326:- | gene-YLR396C_VR1 | rna-NM_001182284.3_VR1 | cds-NP_013500.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:221419-223492:- | gene-YLR396C_ZTW1 | rna-NM_001182284.3_ZTW1 | cds-NP_013500.3_ZTW1 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:870108-872183:- | gene-YLR396C_Sparadoxus | rna-NM_001182284.3_Sparadoxus | cds-NP_013500.3_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |