Gene name: VPS3
Reference locus (S288C): YDR495C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 3; Component of CORVET membrane tethering complex; cytoplasmic protein required for the sorting and processing of soluble vacuolar proteins, acidification of the vacuolar lumen, and assembly of the vacuolar H+-ATPase
Top 10 interactors (score): VPS8 (0.999); PEP5 (0.999); VPS16 (0.999); PEP3 (0.999); VAM6 (0.999); VPS21 (0.999); VPS33 (0.999); VPS41 (0.999); YPT7 (0.997); YPT52 (0.979); MON1 (0.94); PEP7 (0.915); VPS45 (0.909); VPS9 (0.868); CAM1 (0.832); TEF4 (0.832); VPS35 (0.823); PEP8 (0.819); VPS34 (0.814); SEC1 (0.789)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1378100-1381135:- | gene-YDR495C_AKU4011 | rna-NM_001180803.3_AKU4011 | cds-NP_010783.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:19654-22689:- | gene-YDR495C_BG1 | rna-NM_001180803.3_BG1 | cds-NP_010783.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1409446-1412481:- | gene-YDR495C_Bruggeman | rna-NM_001180803.3_Bruggeman | cds-NP_010783.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1386600-1389635:- | gene-YDR495C_CAT1 | rna-NM_001180803.3_CAT1 | cds-NP_010783.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1372342-1375377:- | gene-YDR495C_CBS1585 | rna-NM_001180803.3_CBS1585 | cds-NP_010783.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1391695-1394730:- | gene-YDR495C_CBS436 | rna-NM_001180803.3_CBS436 | cds-NP_010783.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1367984-1371019:- | gene-YDR495C_CBS6412 | rna-NM_001180803.3_CBS6412 | cds-NP_010783.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1390999-1394034:- | gene-YDR495C_CBS6413 | rna-NM_001180803.3_CBS6413 | cds-NP_010783.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1436811-1439845:- | gene-YDR495C_CENPK1137D | rna-NM_001180803.3_CENPK1137D | cds-NP_010783.3_CENPK1137D | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1381391-1384426:- | gene-YDR495C_EthanolRed | rna-NM_001180803.3_EthanolRed | cds-NP_010783.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1384944-1387979:- | gene-YDR495C_FaliES1 | rna-NM_001180803.3_FaliES1 | cds-NP_010783.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:83189-86224:- | gene-YDR495C_JAY291 | rna-NM_001180803.3_JAY291 | cds-NP_010783.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1391944-1394979:- | gene-YDR495C_MUCL30387 | rna-NM_001180803.3_MUCL30387 | cds-NP_010783.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1373964-1376999:- | gene-YDR495C_MUCL30388 | rna-NM_001180803.3_MUCL30388 | cds-NP_010783.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1363827-1366862:- | gene-YDR495C_MUCL39482 | rna-NM_001180803.3_MUCL39482 | cds-NP_010783.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1306617-1309652:- | gene-YDR495C_MUCL42920 | rna-NM_001180803.3_MUCL42920 | cds-NP_010783.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1438038-1441073:- | gene-YDR495C_NCIM3186 | rna-NM_001180803.3_NCIM3186 | cds-NP_010783.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1377614-1380649:- | gene-YDR495C_NCYC1407 | rna-NM_001180803.3_NCYC1407 | cds-NP_010783.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1388456-1391491:- | gene-YDR495C_PE2H3 | rna-NM_001180803.3_PE2H3 | cds-NP_010783.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1394030-1397065:- | gene-YDR495C_PE2H4 | rna-NM_001180803.3_PE2H4 | cds-NP_010783.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1438115-1441150:- | gene-YDR495C_S288C | rna-NM_001180803.3_S288C | cds-NP_010783.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:175989-179024:+ | gene-YDR495C_SA1 | rna-NM_001180803.3_SA1 | cds-NP_010783.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1389166-1392201:- | gene-YDR495C_ThermosaccDry | rna-NM_001180803.3_ThermosaccDry | cds-NP_010783.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1404901-1407936:- | gene-YDR495C_VR1 | rna-NM_001180803.3_VR1 | cds-NP_010783.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:431832-434868:- | gene-YDR495C_ZTW1 | rna-NM_001180803.3_ZTW1 | cds-NP_010783.3_ZTW1 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1391974-1395009:- | gene-YDR495C_Sparadoxus | rna-NM_001180803.3_Sparadoxus | cds-NP_010783.3_Sparadoxus | 87.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |