Gene name: VPS29
Reference locus (S288C): YHR012W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 29; Subunit of the membrane-associated retromer complex; endosomal protein; essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval; Belongs to the VPS29 family
Top 10 interactors (score): PEP8 (0.999); VPS17 (0.999); VPS5 (0.999); VPS35 (0.999); SNX3 (0.998); GYP6 (0.997); YKR078W (0.988); YPT7 (0.987); VPS9 (0.957); PEP1 (0.951); MVP1 (0.951); SNX41 (0.918); SNX4 (0.911); ATG20 (0.9); VPS36 (0.856); VPS34 (0.837); PEP12 (0.813); RVS167 (0.803); YPR097W (0.798); VPS21 (0.795)
Homologues (species, bitscore): VPS29 (Homo sapiens, 117.5); Vps29 (Mus musculus, 120.9); vps29 (Danio rerio, 119.4); vps29 (Xenopus tropicalis, 115.2); Vps29 (Drosophila melanogaster, 129.4); vps-29 (Caenorhabditis elegans, 109.0); MAG1 (Arabidopsis thaliana, 114.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:117771-118738:+ | gene-YHR012W_AKU4011 | rna-NM_001179142.1_AKU4011 | cds-NP_011876.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:37569-38536:+ | gene-YHR012W_BG1 | rna-NM_001179142.1_BG1 | cds-NP_011876.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:124602-125569:+ | gene-YHR012W_Bruggeman | rna-NM_001179142.1_Bruggeman | cds-NP_011876.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:118838-119805:+ | gene-YHR012W_CAT1 | rna-NM_001179142.1_CAT1 | cds-NP_011876.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:118356-119323:+ | gene-YHR012W_CBS1585 | rna-NM_001179142.1_CBS1585 | cds-NP_011876.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:111173-112140:+ | gene-YHR012W_CBS436 | rna-NM_001179142.1_CBS436 | cds-NP_011876.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:117953-118920:+ | gene-YHR012W_CBS6412 | rna-NM_001179142.1_CBS6412 | cds-NP_011876.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:117689-118656:+ | gene-YHR012W_CBS6413 | rna-NM_001179142.1_CBS6413 | cds-NP_011876.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:122640-123607:+ | gene-YHR012W_CENPK1137D | rna-NM_001179142.1_CENPK1137D | cds-NP_011876.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:117568-118535:+ | gene-YHR012W_EthanolRed | rna-NM_001179142.1_EthanolRed | cds-NP_011876.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:118546-119513:+ | gene-YHR012W_FaliES1 | rna-NM_001179142.1_FaliES1 | cds-NP_011876.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000064.1:2708-3675:- | gene-YHR012W_JAY291 | rna-NM_001179142.1_JAY291 | cds-NP_011876.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:123153-124120:+ | gene-YHR012W_MUCL30387 | rna-NM_001179142.1_MUCL30387 | cds-NP_011876.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:124030-124997:+ | gene-YHR012W_MUCL30388 | rna-NM_001179142.1_MUCL30388 | cds-NP_011876.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:117383-118350:+ | gene-YHR012W_MUCL39482 | rna-NM_001179142.1_MUCL39482 | cds-NP_011876.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:122193-123160:+ | gene-YHR012W_MUCL42920 | rna-NM_001179142.1_MUCL42920 | cds-NP_011876.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:129363-130330:+ | gene-YHR012W_NCIM3186 | rna-NM_001179142.1_NCIM3186 | cds-NP_011876.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:116797-117764:+ | gene-YHR012W_NCYC1407 | rna-NM_001179142.1_NCYC1407 | cds-NP_011876.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:118998-119965:+ | gene-YHR012W_PE2H3 | rna-NM_001179142.1_PE2H3 | cds-NP_011876.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:126439-127406:+ | gene-YHR012W_PE2H4 | rna-NM_001179142.1_PE2H4 | cds-NP_011876.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:129481-130448:+ | gene-YHR012W_S288C | rna-NM_001179142.1_S288C | cds-NP_011876.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:16425-17392:- | gene-YHR012W_SA1 | rna-NM_001179142.1_SA1 | cds-NP_011876.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:119635-120602:+ | gene-YHR012W_ThermosaccDry | rna-NM_001179142.1_ThermosaccDry | cds-NP_011876.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:125161-126128:+ | gene-YHR012W_VR1 | rna-NM_001179142.1_VR1 | cds-NP_011876.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:110873-111840:+ | gene-YHR012W_ZTW1 | rna-NM_001179142.1_ZTW1 | cds-NP_011876.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:117271-118230:+ | gene-YHR012W_Sparadoxus | rna-NM_001179142.1_Sparadoxus | cds-NP_011876.1_Sparadoxus | 88.2 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |