Gene name: VPS28
Reference locus (S288C): YPL065W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex; complex is involved in ubiquitin-dependent sorting of proteins into the endosome; conserved C-terminal domain interacts with ESCRT-III subunit Vps20p; other members include Stp22p, Srn2p, Vps28p, and Mvb12p
Top 10 interactors (score): SNF8 (0.999); STP22 (0.999); VPS25 (0.999); SRN2 (0.999); VPS20 (0.999); VPS36 (0.999); DID4 (0.999); MVB12 (0.999); SNF7 (0.999); VPS24 (0.999); VPS27 (0.998); VPS60 (0.976); SLA2 (0.973); DID2 (0.972); HSE1 (0.972); VPS4 (0.963); BRO1 (0.938); IST1 (0.936); EMC4 (0.921); PEP7 (0.839)
Homologues (species, bitscore): VPS28 (Homo sapiens, 90.9); vps28 (Danio rerio, 113.6); vps28 (Xenopus tropicalis, 124.0); Vps28 (Drosophila melanogaster, 117.5); vps-28 (Caenorhabditis elegans, 96.7); VPS28-1 (Arabidopsis thaliana, 139.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:405648-406376:+ | gene-YPL065W_AKU4011 | rna-NM_001183879.1_AKU4011 | cds-NP_015260.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:611326-612054:+ | gene-YPL065W_BG1 | rna-NM_001183879.1_BG1 | cds-NP_015260.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:481976-482704:+ | gene-YPL065W_Bruggeman | rna-NM_001183879.1_Bruggeman | cds-NP_015260.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:522336-523064:+ | gene-YPL065W_CAT1 | rna-NM_001183879.1_CAT1 | cds-NP_015260.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:409721-410449:+ | gene-YPL065W_CBS1585 | rna-NM_001183879.1_CBS1585 | cds-NP_015260.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:424279-425007:+ | gene-YPL065W_CBS436 | rna-NM_001183879.1_CBS436 | cds-NP_015260.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:413910-414638:+ | gene-YPL065W_CBS6412 | rna-NM_001183879.1_CBS6412 | cds-NP_015260.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:406273-407001:+ | gene-YPL065W_CBS6413 | rna-NM_001183879.1_CBS6413 | cds-NP_015260.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:427891-428619:+ | gene-YPL065W_CENPK1137D | rna-NM_001183879.1_CENPK1137D | cds-NP_015260.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:404012-404740:+ | gene-YPL065W_EthanolRed | rna-NM_001183879.1_EthanolRed | cds-NP_015260.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:411842-412570:+ | gene-YPL065W_FaliES1 | rna-NM_001183879.1_FaliES1 | cds-NP_015260.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:20448-21176:+ | gene-YPL065W_JAY291 | rna-NM_001183879.1_JAY291 | cds-NP_015260.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:422806-423534:+ | gene-YPL065W_MUCL30387 | rna-NM_001183879.1_MUCL30387 | cds-NP_015260.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:421892-422620:+ | gene-YPL065W_MUCL30388 | rna-NM_001183879.1_MUCL30388 | cds-NP_015260.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:403050-403778:+ | gene-YPL065W_MUCL39482 | rna-NM_001183879.1_MUCL39482 | cds-NP_015260.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:460914-461642:+ | gene-YPL065W_MUCL42920 | rna-NM_001183879.1_MUCL42920 | cds-NP_015260.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:427910-428638:+ | gene-YPL065W_NCIM3186 | rna-NM_001183879.1_NCIM3186 | cds-NP_015260.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:410333-411061:+ | gene-YPL065W_NCYC1407 | rna-NM_001183879.1_NCYC1407 | cds-NP_015260.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:416940-417668:+ | gene-YPL065W_PE2H3 | rna-NM_001183879.1_PE2H3 | cds-NP_015260.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:416561-417289:+ | gene-YPL065W_PE2H4 | rna-NM_001183879.1_PE2H4 | cds-NP_015260.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:427927-428655:+ | gene-YPL065W_S288C | rna-NM_001183879.1_S288C | cds-NP_015260.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:50036-50764:+ | gene-YPL065W_SA1 | rna-NM_001183879.1_SA1 | cds-NP_015260.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:411642-412370:+ | gene-YPL065W_ThermosaccDry | rna-NM_001183879.1_ThermosaccDry | cds-NP_015260.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:426652-427380:+ | gene-YPL065W_VR1 | rna-NM_001183879.1_VR1 | cds-NP_015260.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:410952-411680:+ | gene-YPL065W_ZTW1 | rna-NM_001183879.1_ZTW1 | cds-NP_015260.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:412679-413407:+ | gene-YPL065W_Sparadoxus | rna-NM_001183879.1_Sparadoxus | cds-NP_015260.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |