Gene name: VPS25
Reference locus (S288C): YJR102C
Gene biotype: protein_coding
Description: Vacuolar protein-sorting-associated protein 25; Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; Belongs to the VPS25 family
Top 10 interactors (score): SNF8 (0.999); VPS20 (0.999); VPS36 (0.999); DID4 (0.999); STP22 (0.999); VPS24 (0.999); VPS28 (0.999); SNF7 (0.999); VPS27 (0.995); MVB12 (0.992); SRN2 (0.988); DID2 (0.982); VPS60 (0.98); HSE1 (0.974); CHM7 (0.94); RIM20 (0.935); VPS4 (0.926); BRO1 (0.907); RIM101 (0.897); IST1 (0.897)
Homologues (species, bitscore): VPS25 (Homo sapiens, 91.7); Vps25 (Mus musculus, 90.5); vps25 (Danio rerio, 97.1); vps25 (Xenopus tropicalis, 102.1); Vps25 (Drosophila melanogaster, 84.3); vps-25 (Caenorhabditis elegans, 85.9); VPS25 (Arabidopsis thaliana, 85.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:590659-591267:- | gene-YJR102C_AKU4011 | rna-NM_001181760.1_AKU4011 | cds-NP_012636.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:16309-16917:+ | gene-YJR102C_BG1 | rna-NM_001181760.1_BG1 | cds-NP_012636.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:606390-606998:- | gene-YJR102C_Bruggeman | rna-NM_001181760.1_Bruggeman | cds-NP_012636.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:609637-610245:- | gene-YJR102C_CAT1 | rna-NM_001181760.1_CAT1 | cds-NP_012636.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:602723-603331:- | gene-YJR102C_CBS1585 | rna-NM_001181760.1_CBS1585 | cds-NP_012636.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:620827-621435:- | gene-YJR102C_CBS436 | rna-NM_001181760.1_CBS436 | cds-NP_012636.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:589870-590478:- | gene-YJR102C_CBS6412 | rna-NM_001181760.1_CBS6412 | cds-NP_012636.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:592131-592739:- | gene-YJR102C_CBS6413 | rna-NM_001181760.1_CBS6413 | cds-NP_012636.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:601476-602084:- | gene-YJR102C_CENPK1137D | rna-NM_001181760.1_CENPK1137D | cds-NP_012636.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:595079-595687:- | gene-YJR102C_EthanolRed | rna-NM_001181760.1_EthanolRed | cds-NP_012636.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:606545-607153:- | gene-YJR102C_FaliES1 | rna-NM_001181760.1_FaliES1 | cds-NP_012636.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:82262-82870:+ | gene-YJR102C_JAY291 | rna-NM_001181760.1_JAY291 | cds-NP_012636.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:604942-605550:- | gene-YJR102C_MUCL30387 | rna-NM_001181760.1_MUCL30387 | cds-NP_012636.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:602908-603516:- | gene-YJR102C_MUCL30388 | rna-NM_001181760.1_MUCL30388 | cds-NP_012636.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:596183-596791:- | gene-YJR102C_MUCL39482 | rna-NM_001181760.1_MUCL39482 | cds-NP_012636.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:600436-601044:- | gene-YJR102C_MUCL42920 | rna-NM_001181760.1_MUCL42920 | cds-NP_012636.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:619136-619744:- | gene-YJR102C_NCIM3186 | rna-NM_001181760.1_NCIM3186 | cds-NP_012636.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:593749-594357:- | gene-YJR102C_NCYC1407 | rna-NM_001181760.1_NCYC1407 | cds-NP_012636.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:611646-612254:- | gene-YJR102C_PE2H3 | rna-NM_001181760.1_PE2H3 | cds-NP_012636.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:605335-605943:- | gene-YJR102C_PE2H4 | rna-NM_001181760.1_PE2H4 | cds-NP_012636.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:619157-619765:- | gene-YJR102C_S288C | rna-NM_001181760.1_S288C | cds-NP_012636.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:77728-78336:- | gene-YJR102C_SA1 | rna-NM_001181760.1_SA1 | cds-NP_012636.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:600479-601087:- | gene-YJR102C_ThermosaccDry | rna-NM_001181760.1_ThermosaccDry | cds-NP_012636.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:602601-603209:- | gene-YJR102C_VR1 | rna-NM_001181760.1_VR1 | cds-NP_012636.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:579842-580450:- | gene-YJR102C_ZTW1 | rna-NM_001181760.1_ZTW1 | cds-NP_012636.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:613635-614243:- | gene-YJR102C_Sparadoxus | rna-NM_001181760.1_Sparadoxus | cds-NP_012636.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |