Gene name: VPS24
Reference locus (S288C): YKL041W
Gene biotype: protein_coding
Description: Vacuolar protein-sorting-associated protein 24; One of four subunits of the ESCRT-III complex; forms an endosomal sorting complex required for transport III (ESCRT-III) subcomplex with Did4p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway
Top 10 interactors (score): STP22 (0.999); VPS25 (0.999); VPS60 (0.999); DID4 (0.999); VPS36 (0.999); VPS20 (0.999); SNF7 (0.999); VPS28 (0.999); DID2 (0.999); SNF8 (0.998); VPS4 (0.998); IST1 (0.997); VPS27 (0.993); SRN2 (0.987); MVB12 (0.98); CHM7 (0.98); HSE1 (0.979); DOA4 (0.978); BRO1 (0.974); ATG8 (0.916)
Homologues (species, bitscore): CHMP3 (Homo sapiens, 92.0); Chmp3 (Mus musculus, 96.3); chmp3 (Danio rerio, 98.6); chmp3 (Xenopus tropicalis, 94.4); Vps24 (Drosophila melanogaster, 110.5); T27F7.1 (Caenorhabditis elegans, 88.6); VPS24.1 (Arabidopsis thaliana, 112.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:346155-346829:+ | gene-YKL041W_AKU4011 | rna-NM_001179607.1_AKU4011 | cds-NP_012883.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:297158-297832:- | gene-YKL041W_BG1 | rna-NM_001179607.1_BG1 | cds-NP_012883.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:365420-366094:+ | gene-YKL041W_Bruggeman | rna-NM_001179607.1_Bruggeman | cds-NP_012883.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:361603-362277:+ | gene-YKL041W_CAT1 | rna-NM_001179607.1_CAT1 | cds-NP_012883.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:358882-359556:+ | gene-YKL041W_CBS1585 | rna-NM_001179607.1_CBS1585 | cds-NP_012883.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:357005-357679:+ | gene-YKL041W_CBS436 | rna-NM_001179607.1_CBS436 | cds-NP_012883.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:343019-343693:+ | gene-YKL041W_CBS6412 | rna-NM_001179607.1_CBS6412 | cds-NP_012883.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:358847-359521:+ | gene-YKL041W_CBS6413 | rna-NM_001179607.1_CBS6413 | cds-NP_012883.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:359801-360475:+ | gene-YKL041W_CENPK1137D | rna-NM_001179607.1_CENPK1137D | cds-NP_012883.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:356837-357511:+ | gene-YKL041W_EthanolRed | rna-NM_001179607.1_EthanolRed | cds-NP_012883.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:357656-358330:+ | gene-YKL041W_FaliES1 | rna-NM_001179607.1_FaliES1 | cds-NP_012883.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:62567-63241:+ | gene-YKL041W_JAY291 | rna-NM_001179607.1_JAY291 | cds-NP_012883.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:366320-366994:+ | gene-YKL041W_MUCL30387 | rna-NM_001179607.1_MUCL30387 | cds-NP_012883.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:361210-361884:+ | gene-YKL041W_MUCL30388 | rna-NM_001179607.1_MUCL30388 | cds-NP_012883.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:358178-358852:+ | gene-YKL041W_MUCL39482 | rna-NM_001179607.1_MUCL39482 | cds-NP_012883.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:363037-363711:+ | gene-YKL041W_MUCL42920 | rna-NM_001179607.1_MUCL42920 | cds-NP_012883.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:360132-360806:+ | gene-YKL041W_NCIM3186 | rna-NM_001179607.1_NCIM3186 | cds-NP_012883.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:358377-359051:+ | gene-YKL041W_NCYC1407 | rna-NM_001179607.1_NCYC1407 | cds-NP_012883.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:382913-383587:+ | gene-YKL041W_PE2H3 | rna-NM_001179607.1_PE2H3 | cds-NP_012883.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:367648-368322:+ | gene-YKL041W_PE2H4 | rna-NM_001179607.1_PE2H4 | cds-NP_012883.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:360143-360817:+ | gene-YKL041W_S288C | rna-NM_001179607.1_S288C | cds-NP_012883.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:38254-38928:+ | gene-YKL041W_SA1 | rna-NM_001179607.1_SA1 | cds-NP_012883.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:358843-359517:+ | gene-YKL041W_ThermosaccDry | rna-NM_001179607.1_ThermosaccDry | cds-NP_012883.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:357984-358658:+ | gene-YKL041W_VR1 | rna-NM_001179607.1_VR1 | cds-NP_012883.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:356856-357530:+ | gene-YKL041W_ZTW1 | rna-NM_001179607.1_ZTW1 | cds-NP_012883.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:376103-376777:+ | gene-YKL041W_Sparadoxus | rna-NM_001179607.1_Sparadoxus | cds-NP_012883.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |