Gene name: VPS20
Reference locus (S288C): YMR077C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 20; Myristoylated subunit of the ESCRT-III complex; the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes
Top 10 interactors (score): VPS28 (0.999); SNF7 (0.999); VPS24 (0.999); STP22 (0.999); VPS4 (0.999); VPS25 (0.999); VPS36 (0.999); DID4 (0.999); SNF8 (0.999); VPS60 (0.998); VPS27 (0.997); DID2 (0.994); SRN2 (0.992); DOA4 (0.987); BRO1 (0.986); MVB12 (0.98); IST1 (0.979); HSE1 (0.972); CHM7 (0.96); RIM20 (0.927)
Homologues (species, bitscore): CHMP6 (Homo sapiens, 88.2); Chmp6 (Mus musculus, 88.6); chmp6b (Danio rerio, 91.7); chmp6 (Xenopus tropicalis, 92.8); Vps20 (Drosophila melanogaster, 93.2); vps-20 (Caenorhabditis elegans, 87.4); VPS20.2 (Arabidopsis thaliana, 82.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:459430-460095:- | gene-YMR077C_AKU4011 | rna-NM_001182576.1_AKU4011 | cds-NP_013794.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:82929-83594:+ | gene-YMR077C_BG1 | rna-NM_001182576.1_BG1 | cds-NP_013794.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:401608-402273:- | gene-YMR077C_Bruggeman | rna-NM_001182576.1_Bruggeman | cds-NP_013794.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:401924-402589:- | gene-YMR077C_CAT1 | rna-NM_001182576.1_CAT1 | cds-NP_013794.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:392370-393035:- | gene-YMR077C_CBS1585 | rna-NM_001182576.1_CBS1585 | cds-NP_013794.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:397685-398350:- | gene-YMR077C_CBS436 | rna-NM_001182576.1_CBS436 | cds-NP_013794.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:505444-506109:- | gene-YMR077C_CBS6412 | rna-NM_001182576.1_CBS6412 | cds-NP_013794.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:391627-392292:- | gene-YMR077C_CBS6413 | rna-NM_001182576.1_CBS6413 | cds-NP_013794.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:415589-416254:- | gene-YMR077C_CENPK1137D | rna-NM_001182576.1_CENPK1137D | cds-NP_013794.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:392262-392927:- | gene-YMR077C_EthanolRed | rna-NM_001182576.1_EthanolRed | cds-NP_013794.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:395428-396093:- | gene-YMR077C_FaliES1 | rna-NM_001182576.1_FaliES1 | cds-NP_013794.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:41130-41795:+ | gene-YMR077C_JAY291 | rna-NM_001182576.1_JAY291 | cds-NP_013794.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:397342-398007:- | gene-YMR077C_MUCL30387 | rna-NM_001182576.1_MUCL30387 | cds-NP_013794.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:402028-402693:- | gene-YMR077C_MUCL30388 | rna-NM_001182576.1_MUCL30388 | cds-NP_013794.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:392658-393323:- | gene-YMR077C_MUCL39482 | rna-NM_001182576.1_MUCL39482 | cds-NP_013794.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:399345-400010:- | gene-YMR077C_MUCL42920 | rna-NM_001182576.1_MUCL42920 | cds-NP_013794.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:421438-422103:- | gene-YMR077C_NCIM3186 | rna-NM_001182576.1_NCIM3186 | cds-NP_013794.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:392573-393238:- | gene-YMR077C_NCYC1407 | rna-NM_001182576.1_NCYC1407 | cds-NP_013794.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:398284-398949:- | gene-YMR077C_PE2H3 | rna-NM_001182576.1_PE2H3 | cds-NP_013794.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:404379-405044:- | gene-YMR077C_PE2H4 | rna-NM_001182576.1_PE2H4 | cds-NP_013794.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:421484-422149:- | gene-YMR077C_S288C | rna-NM_001182576.1_S288C | cds-NP_013794.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:128020-128685:+ | gene-YMR077C_SA1 | rna-NM_001182576.1_SA1 | cds-NP_013794.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:393231-393896:- | gene-YMR077C_ThermosaccDry | rna-NM_001182576.1_ThermosaccDry | cds-NP_013794.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:404869-405534:- | gene-YMR077C_VR1 | rna-NM_001182576.1_VR1 | cds-NP_013794.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:369508-370173:- | gene-YMR077C_ZTW1 | rna-NM_001182576.1_ZTW1 | cds-NP_013794.1_ZTW1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:405906-406571:- | gene-YMR077C_Sparadoxus | rna-NM_001182576.1_Sparadoxus | cds-NP_013794.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |