Gene name: VPS17
Reference locus (S288C): YOR132W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 17; Subunit of the membrane-associated retromer complex; essential for endosome-to-Golgi retrograde protein transport; peripheral membrane protein that assembles onto the membrane with Vps5p to promote vesicle formation; required for recruiting the retromer complex to the endosome membranes; Belongs to the VPS17 family
Top 10 interactors (score): VPS29 (0.999); VPS35 (0.999); VPS5 (0.999); PEP8 (0.999); SNX3 (0.973); SNX4 (0.945); MVP1 (0.927); PEP1 (0.916); YPT7 (0.868); SNX41 (0.819); ATG20 (0.79); RVS167 (0.788); RGP1 (0.773); VPS8 (0.767); PRC1 (0.762); YKR078W (0.761); VPS21 (0.729); YPT6 (0.727); SNC1 (0.683); VPS30 (0.667)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:557785-559440:+ | gene-YOR132W_AKU4011 | rna-NM_001183551.3_AKU4011 | cds-NP_014775.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:20370-22025:- | gene-YOR132W_BG1 | rna-NM_001183551.3_BG1 | cds-NP_014775.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:560786-562441:+ | gene-YOR132W_Bruggeman | rna-NM_001183551.3_Bruggeman | cds-NP_014775.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:560814-562469:+ | gene-YOR132W_CAT1 | rna-NM_001183551.3_CAT1 | cds-NP_014775.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:552807-554462:+ | gene-YOR132W_CBS1585 | rna-NM_001183551.3_CBS1585 | cds-NP_014775.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:557512-559167:+ | gene-YOR132W_CBS436 | rna-NM_001183551.3_CBS436 | cds-NP_014775.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:551293-552948:+ | gene-YOR132W_CBS6412 | rna-NM_001183551.3_CBS6412 | cds-NP_014775.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:558589-560244:+ | gene-YOR132W_CBS6413 | rna-NM_001183551.3_CBS6413 | cds-NP_014775.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:573250-574905:+ | gene-YOR132W_CENPK1137D | rna-NM_001183551.3_CENPK1137D | cds-NP_014775.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:553614-555269:+ | gene-YOR132W_EthanolRed | rna-NM_001183551.3_EthanolRed | cds-NP_014775.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:557310-558965:+ | gene-YOR132W_FaliES1 | rna-NM_001183551.3_FaliES1 | cds-NP_014775.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:302-1957:- | gene-YOR132W_JAY291 | rna-NM_001183551.3_JAY291 | cds-NP_014775.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:565345-567000:+ | gene-YOR132W_MUCL30387 | rna-NM_001183551.3_MUCL30387 | cds-NP_014775.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:570551-572206:+ | gene-YOR132W_MUCL30388 | rna-NM_001183551.3_MUCL30388 | cds-NP_014775.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:560690-562345:+ | gene-YOR132W_MUCL39482 | rna-NM_001183551.3_MUCL39482 | cds-NP_014775.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:576226-577881:+ | gene-YOR132W_MUCL42920 | rna-NM_001183551.3_MUCL42920 | cds-NP_014775.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:573064-574719:+ | gene-YOR132W_NCIM3186 | rna-NM_001183551.3_NCIM3186 | cds-NP_014775.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:566649-568304:+ | gene-YOR132W_NCYC1407 | rna-NM_001183551.3_NCYC1407 | cds-NP_014775.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:565651-567306:+ | gene-YOR132W_PE2H3 | rna-NM_001183551.3_PE2H3 | cds-NP_014775.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:576028-577683:+ | gene-YOR132W_PE2H4 | rna-NM_001183551.3_PE2H4 | cds-NP_014775.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:573175-574830:+ | gene-YOR132W_S288C | rna-NM_001183551.3_S288C | cds-NP_014775.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:102724-104379:+ | gene-YOR132W_SA1 | rna-NM_001183551.3_SA1 | cds-NP_014775.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:556493-558148:+ | gene-YOR132W_ThermosaccDry | rna-NM_001183551.3_ThermosaccDry | cds-NP_014775.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:558596-560251:+ | gene-YOR132W_VR1 | rna-NM_001183551.3_VR1 | cds-NP_014775.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:290424-292079:+ | gene-YOR132W_ZTW1 | rna-NM_001183551.3_ZTW1 | cds-NP_014775.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:561870-563522:+ | gene-YOR132W_Sparadoxus | rna-NM_001183551.3_Sparadoxus | cds-NP_014775.3_Sparadoxus | 88.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |