Gene name: VPS16
Reference locus (S288C): YPL045W
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 16; Subunit of the HOPS and the CORVET complexes; part of the Class C Vps complex essential for membrane docking and fusion at Golgi-to-endosome and endosome-to-vacuole protein transport stages
Top 10 interactors (score): VAM3 (0.999); VAM7 (0.999); VAM6 (0.999); YPT7 (0.999); VPS3 (0.999); VPS41 (0.999); VTI1 (0.999); YPT52 (0.999); PEP5 (0.999); PEP3 (0.999); VPS8 (0.999); VPS33 (0.999); PEP12 (0.994); VPS45 (0.985); SEC1 (0.967); SEC4 (0.946); VPS21 (0.933); PEP7 (0.901); NYV1 (0.9); MON1 (0.877)
Homologues (species, bitscore): VPS16 (Homo sapiens, 169.5); Vps16 (Mus musculus, 167.9); vps16 (Danio rerio, 167.5); vps16 (Xenopus tropicalis, 154.1); Vps16A (Drosophila melanogaster, 144.4); vps-16 (Caenorhabditis elegans, 78.6); VCL1 (Arabidopsis thaliana, 171.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:438760-441156:+ | gene-YPL045W_AKU4011 | rna-NM_001183859.1_AKU4011 | cds-NP_015280.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:456289-458685:- | gene-YPL045W_BG1 | rna-NM_001183859.1_BG1 | cds-NP_015280.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:515701-518097:+ | gene-YPL045W_Bruggeman | rna-NM_001183859.1_Bruggeman | cds-NP_015280.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:555387-557783:+ | gene-YPL045W_CAT1 | rna-NM_001183859.1_CAT1 | cds-NP_015280.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:442828-445224:+ | gene-YPL045W_CBS1585 | rna-NM_001183859.1_CBS1585 | cds-NP_015280.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:456946-459342:+ | gene-YPL045W_CBS436 | rna-NM_001183859.1_CBS436 | cds-NP_015280.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:447018-449414:+ | gene-YPL045W_CBS6412 | rna-NM_001183859.1_CBS6412 | cds-NP_015280.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:439379-441775:+ | gene-YPL045W_CBS6413 | rna-NM_001183859.1_CBS6413 | cds-NP_015280.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:467237-469633:+ | gene-YPL045W_CENPK1137D | rna-NM_001183859.1_CENPK1137D | cds-NP_015280.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:437116-439512:+ | gene-YPL045W_EthanolRed | rna-NM_001183859.1_EthanolRed | cds-NP_015280.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:444946-447342:+ | gene-YPL045W_FaliES1 | rna-NM_001183859.1_FaliES1 | cds-NP_015280.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:53537-55933:+ | gene-YPL045W_JAY291 | rna-NM_001183859.1_JAY291 | cds-NP_015280.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:456635-459031:+ | gene-YPL045W_MUCL30387 | rna-NM_001183859.1_MUCL30387 | cds-NP_015280.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:455776-458172:+ | gene-YPL045W_MUCL30388 | rna-NM_001183859.1_MUCL30388 | cds-NP_015280.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:436144-438540:+ | gene-YPL045W_MUCL39482 | rna-NM_001183859.1_MUCL39482 | cds-NP_015280.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:494739-497135:+ | gene-YPL045W_MUCL42920 | rna-NM_001183859.1_MUCL42920 | cds-NP_015280.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:467243-469639:+ | gene-YPL045W_NCIM3186 | rna-NM_001183859.1_NCIM3186 | cds-NP_015280.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:443424-445820:+ | gene-YPL045W_NCYC1407 | rna-NM_001183859.1_NCYC1407 | cds-NP_015280.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:450031-452427:+ | gene-YPL045W_PE2H3 | rna-NM_001183859.1_PE2H3 | cds-NP_015280.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:449646-452042:+ | gene-YPL045W_PE2H4 | rna-NM_001183859.1_PE2H4 | cds-NP_015280.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:467260-469656:+ | gene-YPL045W_S288C | rna-NM_001183859.1_S288C | cds-NP_015280.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:5088-7484:+ | gene-YPL045W_SA1 | rna-NM_001183859.1_SA1 | cds-NP_015280.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:444745-447141:+ | gene-YPL045W_ThermosaccDry | rna-NM_001183859.1_ThermosaccDry | cds-NP_015280.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:459562-461958:+ | gene-YPL045W_VR1 | rna-NM_001183859.1_VR1 | cds-NP_015280.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:444048-446444:+ | gene-YPL045W_ZTW1 | rna-NM_001183859.1_ZTW1 | cds-NP_015280.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:444645-447041:+ | gene-YPL045W_Sparadoxus | rna-NM_001183859.1_Sparadoxus | cds-NP_015280.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |