Gene name: VPS1
Reference locus (S288C): YKR001C
Gene biotype: protein_coding
Description: Vacuolar protein sorting-associated protein 1; Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, endocytosis, late Golgi-retention of some proteins, regulation of peroxisome biogenesis
Top 10 interactors (score): RVS167 (0.991); CHC1 (0.989); RVS161 (0.982); EDE1 (0.976); SLA2 (0.97); FIS1 (0.959); APL3 (0.954); ATG11 (0.954); ACT1 (0.943); YNK1 (0.943); PAN1 (0.934); APM4 (0.93); YAP1801 (0.924); END3 (0.924); APL2 (0.923); INP53 (0.922); INP52 (0.921); SNC1 (0.92); OMA1 (0.915); CLC1 (0.915)
Homologues (species, bitscore): DNM1L (Homo sapiens, 556.2); Dnm1l (Mus musculus, 560.5); dnm1l (Danio rerio, 554.7); dnm1l (Xenopus tropicalis, 514.6); Drp1 (Drosophila melanogaster, 530.0); drp-1 (Caenorhabditis elegans, 533.1); DRP3A (Arabidopsis thaliana, 520.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:426630-428744:- | gene-YKR001C_AKU4011 | rna-NM_001179791.1_AKU4011 | cds-NP_012926.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:215181-217295:+ | gene-YKR001C_BG1 | rna-NM_001179791.1_BG1 | cds-NP_012926.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:448315-450429:- | gene-YKR001C_Bruggeman | rna-NM_001179791.1_Bruggeman | cds-NP_012926.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:443421-445535:- | gene-YKR001C_CAT1 | rna-NM_001179791.1_CAT1 | cds-NP_012926.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:439349-441463:- | gene-YKR001C_CBS1585 | rna-NM_001179791.1_CBS1585 | cds-NP_012926.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:438190-440304:- | gene-YKR001C_CBS436 | rna-NM_001179791.1_CBS436 | cds-NP_012926.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:423507-425621:- | gene-YKR001C_CBS6412 | rna-NM_001179791.1_CBS6412 | cds-NP_012926.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:439202-441316:- | gene-YKR001C_CBS6413 | rna-NM_001179791.1_CBS6413 | cds-NP_012926.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:440285-442399:- | gene-YKR001C_CENPK1137D | rna-NM_001179791.1_CENPK1137D | cds-NP_012926.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:437111-439225:- | gene-YKR001C_EthanolRed | rna-NM_001179791.1_EthanolRed | cds-NP_012926.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:439201-441315:- | gene-YKR001C_FaliES1 | rna-NM_001179791.1_FaliES1 | cds-NP_012926.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000120.1:15510-17624:+ | gene-YKR001C_JAY291 | rna-NM_001179791.1_JAY291 | cds-NP_012926.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:447629-449743:- | gene-YKR001C_MUCL30387 | rna-NM_001179791.1_MUCL30387 | cds-NP_012926.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:443240-445354:- | gene-YKR001C_MUCL30388 | rna-NM_001179791.1_MUCL30388 | cds-NP_012926.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:438666-440780:- | gene-YKR001C_MUCL39482 | rna-NM_001179791.1_MUCL39482 | cds-NP_012926.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:444474-446588:- | gene-YKR001C_MUCL42920 | rna-NM_001179791.1_MUCL42920 | cds-NP_012926.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:440597-442711:- | gene-YKR001C_NCIM3186 | rna-NM_001179791.1_NCIM3186 | cds-NP_012926.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:438874-440988:- | gene-YKR001C_NCYC1407 | rna-NM_001179791.1_NCYC1407 | cds-NP_012926.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:463528-465642:- | gene-YKR001C_PE2H3 | rna-NM_001179791.1_PE2H3 | cds-NP_012926.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:448270-450384:- | gene-YKR001C_PE2H4 | rna-NM_001179791.1_PE2H4 | cds-NP_012926.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:440608-442722:- | gene-YKR001C_S288C | rna-NM_001179791.1_S288C | cds-NP_012926.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:118873-120987:- | gene-YKR001C_SA1 | rna-NM_001179791.1_SA1 | cds-NP_012926.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:439299-441413:- | gene-YKR001C_ThermosaccDry | rna-NM_001179791.1_ThermosaccDry | cds-NP_012926.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:438551-440665:- | gene-YKR001C_VR1 | rna-NM_001179791.1_VR1 | cds-NP_012926.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:437338-439452:- | gene-YKR001C_ZTW1 | rna-NM_001179791.1_ZTW1 | cds-NP_012926.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:462271-464385:- | gene-YKR001C_Sparadoxus | rna-NM_001179791.1_Sparadoxus | cds-NP_012926.1_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |