Gene name: VMA6
Reference locus (S288C): YLR447C
Gene biotype: protein_coding
Description: Subunit d of the V0 integral membrane domain of V-ATPase; part of the electrogenic proton pump found in the endomembrane system; required for V1 domain assembly on the vacuolar membrane; the V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase) has five subunits
Top 10 interactors (score): VMA2 (0.999); VMA8 (0.999); VMA16 (0.999); VPH1 (0.999); VMA7 (0.999); STV1 (0.999); VMA11 (0.999); VMA13 (0.999); VMA1 (0.999); VMA5 (0.999); VMA4 (0.999); VMA10 (0.999); VMA3 (0.999); VMA9 (0.989); ATP1 (0.955); VAM6 (0.94); ATP16 (0.936); VOA1 (0.924); ATP3 (0.92); ATP5 (0.92)
Homologues (species, bitscore): ATP6V0D1 (Homo sapiens, 317.0); Atp6v0d1 (Mus musculus, 317.0); atp6v0d1 (Danio rerio, 326.6); atp6v0d1 (Xenopus tropicalis, 303.9); VhaAC39-1 (Drosophila melanogaster, 323.2); vha-16 (Caenorhabditis elegans, 302.0); AT3G28715 (Arabidopsis thaliana, 310.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:965124-966161:- | gene-YLR447C_AKU4011 | rna-NM_001182335.3_AKU4011 | cds-NP_013552.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:197571-198608:- | gene-YLR447C_BG1 | rna-NM_001182335.3_BG1 | cds-NP_013552.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:1003436-1004473:- | gene-YLR447C_Bruggeman | rna-NM_001182335.3_Bruggeman | cds-NP_013552.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:999436-1000473:- | gene-YLR447C_CAT1 | rna-NM_001182335.3_CAT1 | cds-NP_013552.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:1000714-1001751:- | gene-YLR447C_CBS1585 | rna-NM_001182335.3_CBS1585 | cds-NP_013552.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:990059-991096:- | gene-YLR447C_CBS436 | rna-NM_001182335.3_CBS436 | cds-NP_013552.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1036761-1037798:- | gene-YLR447C_CBS6412 | rna-NM_001182335.3_CBS6412 | cds-NP_013552.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:1001502-1002539:- | gene-YLR447C_CBS6413 | rna-NM_001182335.3_CBS6413 | cds-NP_013552.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1011463-1012500:- | gene-YLR447C_CENPK1137D | rna-NM_001182335.3_CENPK1137D | cds-NP_013552.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:958145-959182:- | gene-YLR447C_EthanolRed | rna-NM_001182335.3_EthanolRed | cds-NP_013552.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:993416-994453:- | gene-YLR447C_FaliES1 | rna-NM_001182335.3_FaliES1 | cds-NP_013552.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:24219-25256:+ | gene-YLR447C_JAY291 | rna-NM_001182335.3_JAY291 | cds-NP_013552.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:1002292-1003329:- | gene-YLR447C_MUCL30387 | rna-NM_001182335.3_MUCL30387 | cds-NP_013552.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1012126-1013163:- | gene-YLR447C_MUCL30388 | rna-NM_001182335.3_MUCL30388 | cds-NP_013552.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:1001948-1002985:- | gene-YLR447C_MUCL39482 | rna-NM_001182335.3_MUCL39482 | cds-NP_013552.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:1002417-1003454:- | gene-YLR447C_MUCL42920 | rna-NM_001182335.3_MUCL42920 | cds-NP_013552.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1026830-1027867:- | gene-YLR447C_NCIM3186 | rna-NM_001182335.3_NCIM3186 | cds-NP_013552.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1011367-1012404:- | gene-YLR447C_NCYC1407 | rna-NM_001182335.3_NCYC1407 | cds-NP_013552.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:997839-998876:- | gene-YLR447C_PE2H3 | rna-NM_001182335.3_PE2H3 | cds-NP_013552.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:997583-998620:- | gene-YLR447C_PE2H4 | rna-NM_001182335.3_PE2H4 | cds-NP_013552.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1026856-1027893:- | gene-YLR447C_S288C | rna-NM_001182335.3_S288C | cds-NP_013552.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:31981-33018:+ | gene-YLR447C_SA1 | rna-NM_001182335.3_SA1 | cds-NP_013552.3_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:996494-997531:- | gene-YLR447C_ThermosaccDry | rna-NM_001182335.3_ThermosaccDry | cds-NP_013552.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1002922-1003959:- | gene-YLR447C_VR1 | rna-NM_001182335.3_VR1 | cds-NP_013552.3_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:326767-327804:- | gene-YLR447C_ZTW1 | rna-NM_001182335.3_ZTW1 | cds-NP_013552.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:975760-976797:- | gene-YLR447C_Sparadoxus | rna-NM_001182335.3_Sparadoxus | cds-NP_013552.3_Sparadoxus | 95.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |