Gene name: VMA5
Reference locus (S288C): YKL080W
Gene biotype: protein_coding
Description: Subunit C of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits
Top 10 interactors (score): VMA7 (0.999); VPH1 (0.999); VMA13 (0.999); VMA11 (0.999); STV1 (0.999); VMA1 (0.999); VMA16 (0.999); VMA6 (0.999); VMA3 (0.999); VMA4 (0.999); VMA10 (0.999); VMA8 (0.999); VMA2 (0.999); VMA9 (0.982); ATP1 (0.939); ATP3 (0.927); ATP16 (0.917); ATP15 (0.916); ATP7 (0.916); VOA1 (0.916)
Homologues (species, bitscore): ATP6V1C1 (Homo sapiens, 227.6); Atp6v1c1 (Mus musculus, 223.0); atp6v1c1a (Danio rerio, 234.6); atp6v1c2 (Xenopus tropicalis, 231.5); Vha44 (Drosophila melanogaster, 205.7); vha-11 (Caenorhabditis elegans, 233.4); DET3 (Arabidopsis thaliana, 193.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:271589-272767:+ | gene-YKL080W_AKU4011 | rna-NM_001179646.1_AKU4011 | cds-NP_012843.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:248764-249942:+ | gene-YKL080W_BG1 | rna-NM_001179646.1_BG1 | cds-NP_012843.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:289753-290931:+ | gene-YKL080W_Bruggeman | rna-NM_001179646.1_Bruggeman | cds-NP_012843.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:284558-285736:+ | gene-YKL080W_CAT1 | rna-NM_001179646.1_CAT1 | cds-NP_012843.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:283830-285008:+ | gene-YKL080W_CBS1585 | rna-NM_001179646.1_CBS1585 | cds-NP_012843.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:282422-283600:+ | gene-YKL080W_CBS436 | rna-NM_001179646.1_CBS436 | cds-NP_012843.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:268457-269635:+ | gene-YKL080W_CBS6412 | rna-NM_001179646.1_CBS6412 | cds-NP_012843.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:284284-285462:+ | gene-YKL080W_CBS6413 | rna-NM_001179646.1_CBS6413 | cds-NP_012843.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:284667-285845:+ | gene-YKL080W_CENPK1137D | rna-NM_001179646.1_CENPK1137D | cds-NP_012843.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:282280-283458:+ | gene-YKL080W_EthanolRed | rna-NM_001179646.1_EthanolRed | cds-NP_012843.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:283092-284270:+ | gene-YKL080W_FaliES1 | rna-NM_001179646.1_FaliES1 | cds-NP_012843.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:105419-106597:+ | gene-YKL080W_JAY291 | rna-NM_001179646.1_JAY291 | cds-NP_012843.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:291553-292731:+ | gene-YKL080W_MUCL30387 | rna-NM_001179646.1_MUCL30387 | cds-NP_012843.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:285949-287127:+ | gene-YKL080W_MUCL30388 | rna-NM_001179646.1_MUCL30388 | cds-NP_012843.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:283615-284793:+ | gene-YKL080W_MUCL39482 | rna-NM_001179646.1_MUCL39482 | cds-NP_012843.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:288244-289422:+ | gene-YKL080W_MUCL42920 | rna-NM_001179646.1_MUCL42920 | cds-NP_012843.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:285019-286197:+ | gene-YKL080W_NCIM3186 | rna-NM_001179646.1_NCIM3186 | cds-NP_012843.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:283810-284988:+ | gene-YKL080W_NCYC1407 | rna-NM_001179646.1_NCYC1407 | cds-NP_012843.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:290898-292076:+ | gene-YKL080W_PE2H3 | rna-NM_001179646.1_PE2H3 | cds-NP_012843.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:287185-288363:+ | gene-YKL080W_PE2H4 | rna-NM_001179646.1_PE2H4 | cds-NP_012843.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:285030-286208:+ | gene-YKL080W_S288C | rna-NM_001179646.1_S288C | cds-NP_012843.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:201158-202336:+ | gene-YKL080W_SA1 | rna-NM_001179646.1_SA1 | cds-NP_012843.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:283801-284979:+ | gene-YKL080W_ThermosaccDry | rna-NM_001179646.1_ThermosaccDry | cds-NP_012843.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:283158-284336:+ | gene-YKL080W_VR1 | rna-NM_001179646.1_VR1 | cds-NP_012843.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:282362-283540:+ | gene-YKL080W_ZTW1 | rna-NM_001179646.1_ZTW1 | cds-NP_012843.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:299428-300606:+ | gene-YKL080W_Sparadoxus | rna-NM_001179646.1_Sparadoxus | cds-NP_012843.1_Sparadoxus | 94.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |