Gene name: VMA3
Reference locus (S288C): YEL027W
Gene biotype: protein_coding
Description: V-type proton ATPase subunit c; Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase; dicyclohexylcarbodiimide binding subunit; required for vacuolar acidification and important for copper and iron metal ion homeostasis; Belongs to the V-ATPase proteolipid subunit family
Top 10 interactors (score): VMA6 (0.999); VMA2 (0.999); VMA8 (0.999); VMA5 (0.999); VMA10 (0.999); VMA4 (0.999); STV1 (0.999); VMA13 (0.999); VPH1 (0.999); VMA7 (0.999); VMA1 (0.999); VMA16 (0.999); VMA11 (0.995); ATP1 (0.993); ATP3 (0.993); ATP6 (0.992); ATP16 (0.99); ATP5 (0.986); VMA9 (0.984); ATP2 (0.979)
Homologues (species, bitscore): ATP6V0C (Homo sapiens, 212.6); Atp6v0c (Mus musculus, 213.4); atp6v0ca (Danio rerio, 218.8); atp6v0c (Xenopus tropicalis, 215.3); Vha16-1 (Drosophila melanogaster, 213.8); vha-2 (Caenorhabditis elegans, 183.3); AVA-P2 (Arabidopsis thaliana, 177.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:94802-95284:+ | gene-YEL027W_AKU4011 | rna-NM_001178842.3_AKU4011 | cds-NP_010887.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:330674-331156:- | gene-YEL027W_BG1 | rna-NM_001178842.3_BG1 | cds-NP_010887.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:100205-100687:+ | gene-YEL027W_Bruggeman | rna-NM_001178842.3_Bruggeman | cds-NP_010887.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:96981-97463:+ | gene-YEL027W_CAT1 | rna-NM_001178842.3_CAT1 | cds-NP_010887.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:94743-95225:+ | gene-YEL027W_CBS1585 | rna-NM_001178842.3_CBS1585 | cds-NP_010887.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:96378-96860:+ | gene-YEL027W_CBS436 | rna-NM_001178842.3_CBS436 | cds-NP_010887.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:95022-95504:+ | gene-YEL027W_CBS6412 | rna-NM_001178842.3_CBS6412 | cds-NP_010887.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:99635-100117:+ | gene-YEL027W_CBS6413 | rna-NM_001178842.3_CBS6413 | cds-NP_010887.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:98627-99109:+ | gene-YEL027W_CENPK1137D | rna-NM_001178842.3_CENPK1137D | cds-NP_010887.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:95133-95615:+ | gene-YEL027W_EthanolRed | rna-NM_001178842.3_EthanolRed | cds-NP_010887.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:95392-95874:+ | gene-YEL027W_FaliES1 | rna-NM_001178842.3_FaliES1 | cds-NP_010887.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:14279-14761:+ | gene-YEL027W_JAY291 | rna-NM_001178842.3_JAY291 | cds-NP_010887.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:99058-99540:+ | gene-YEL027W_MUCL30387 | rna-NM_001178842.3_MUCL30387 | cds-NP_010887.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:95029-95511:+ | gene-YEL027W_MUCL30388 | rna-NM_001178842.3_MUCL30388 | cds-NP_010887.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:94112-94594:+ | gene-YEL027W_MUCL39482 | rna-NM_001178842.3_MUCL39482 | cds-NP_010887.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:98743-99225:+ | gene-YEL027W_MUCL42920 | rna-NM_001178842.3_MUCL42920 | cds-NP_010887.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:100768-101250:+ | gene-YEL027W_NCIM3186 | rna-NM_001178842.3_NCIM3186 | cds-NP_010887.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:99207-99689:+ | gene-YEL027W_NCYC1407 | rna-NM_001178842.3_NCYC1407 | cds-NP_010887.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:103245-103727:+ | gene-YEL027W_PE2H3 | rna-NM_001178842.3_PE2H3 | cds-NP_010887.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:99160-99642:+ | gene-YEL027W_PE2H4 | rna-NM_001178842.3_PE2H4 | cds-NP_010887.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:100769-101251:+ | gene-YEL027W_S288C | rna-NM_001178842.3_S288C | cds-NP_010887.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:141984-142466:- | gene-YEL027W_SA1 | rna-NM_001178842.3_SA1 | cds-NP_010887.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:95797-96279:+ | gene-YEL027W_ThermosaccDry | rna-NM_001178842.3_ThermosaccDry | cds-NP_010887.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:95328-95810:+ | gene-YEL027W_VR1 | rna-NM_001178842.3_VR1 | cds-NP_010887.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:94154-94636:+ | gene-YEL027W_ZTW1 | rna-NM_001178842.3_ZTW1 | cds-NP_010887.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:97323-97805:+ | gene-YEL027W_Sparadoxus | rna-NM_001178842.3_Sparadoxus | cds-NP_010887.3_Sparadoxus | 98.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |