VMA22 (YHR060W)


Gene profile

Gene name: VMA22
Reference locus (S288C): YHR060W
Gene biotype: protein_coding

Description: Coiled-coil domain-containing protein 115; Protein that is required for vacuolar H+-ATPase (V-ATPase) function; peripheral membrane protein; not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)

Top 10 interactors (score): VPH2 (0.996); VPH1 (0.971); VMA8 (0.912); VMA6 (0.898); VOA1 (0.897); VMA11 (0.81); VMA10 (0.81); VMA21 (0.806); VMA7 (0.797); STV1 (0.784); VMA5 (0.782); VMA4 (0.768); VMA13 (0.765); VMA3 (0.716); SHR3 (0.713); VMA2 (0.699); VMA16 (0.694); VMA1 (0.685); LOC1 (0.595); VFA1 (0.497)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005302.1:206984-207529:+ gene-YHR060W_AKU4011 rna-NM_001179190.1_AKU4011 cds-NP_011927.1_AKU4011 99.8 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000053.1:128124-128669:+ gene-YHR060W_BG1 rna-NM_001179190.1_BG1 cds-NP_011927.1_BG1 99.8 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005510.1:214742-215287:+ gene-YHR060W_Bruggeman rna-NM_001179190.1_Bruggeman cds-NP_011927.1_Bruggeman 99.8 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005526.1:209530-210075:+ gene-YHR060W_CAT1 rna-NM_001179190.1_CAT1 cds-NP_011927.1_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005366.1:206090-206635:+ gene-YHR060W_CBS1585 rna-NM_001179190.1_CBS1585 cds-NP_011927.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005350.1:204047-204592:+ gene-YHR060W_CBS436 rna-NM_001179190.1_CBS436 cds-NP_011927.1_CBS436 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:206322-206867:+ gene-YHR060W_CBS6412 rna-NM_001179190.1_CBS6412 cds-NP_011927.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005318.1:207154-207699:+ gene-YHR060W_CBS6413 rna-NM_001179190.1_CBS6413 cds-NP_011927.1_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001529.1:213888-214433:+ gene-YHR060W_CENPK1137D rna-NM_001179190.1_CENPK1137D cds-NP_011927.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005478.1:206481-207026:+ gene-YHR060W_EthanolRed rna-NM_001179190.1_EthanolRed cds-NP_011927.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005542.1:207458-208003:+ gene-YHR060W_FaliES1 rna-NM_001179190.1_FaliES1 cds-NP_011927.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000280.1:9305-9850:- gene-YHR060W_JAY291 rna-NM_001179190.1_JAY291 cds-NP_011927.1_JAY291 99.8 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005414.1:214494-215039:+ gene-YHR060W_MUCL30387 rna-NM_001179190.1_MUCL30387 cds-NP_011927.1_MUCL30387 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005446.1:214376-214921:+ gene-YHR060W_MUCL30388 rna-NM_001179190.1_MUCL30388 cds-NP_011927.1_MUCL30388 99.8 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005286.1:206375-206920:+ gene-YHR060W_MUCL39482 rna-NM_001179190.1_MUCL39482 cds-NP_011927.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005430.1:213281-213826:+ gene-YHR060W_MUCL42920 rna-NM_001179190.1_MUCL42920 cds-NP_011927.1_MUCL42920 99.8 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011817.1:220607-221152:+ gene-YHR060W_NCIM3186 rna-NM_001179190.1_NCIM3186 cds-NP_011927.1_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:678016-678561:+ gene-YHR060W_NCYC1407 rna-NM_001179190.1_NCYC1407 cds-NP_011927.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994147.1:208578-209123:+ gene-YHR060W_PE2H3 rna-NM_001179190.1_PE2H3 cds-NP_011927.1_PE2H3 99.8 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999879.1:216025-216570:+ gene-YHR060W_PE2H4 rna-NM_001179190.1_PE2H4 cds-NP_011927.1_PE2H4 99.8 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001140.6:220725-221270:+ gene-YHR060W_S288C rna-NM_001179190.1_S288C cds-NP_011927.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000014.1:138171-138716:- gene-YHR060W_SA1 rna-NM_001179190.1_SA1 cds-NP_011927.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005494.1:208549-209094:+ gene-YHR060W_ThermosaccDry rna-NM_001179190.1_ThermosaccDry cds-NP_011927.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005462.1:216188-216733:+ gene-YHR060W_VR1 rna-NM_001179190.1_VR1 cds-NP_011927.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000017.1:200102-200647:+ gene-YHR060W_ZTW1 rna-NM_001179190.1_ZTW1 cds-NP_011927.1_ZTW1 99.6 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047494.1:205647-206192:+ gene-YHR060W_Sparadoxus rna-NM_001179190.1_Sparadoxus cds-NP_011927.1_Sparadoxus 89.5 100.0 Verified 1 1 0 False False True False False

Additional files