Gene name: VMA21
Reference locus (S288C): YGR105W
Gene biotype: protein_coding
Description: Integral membrane protein required for V-ATPase function; not an actual component of the vacuolar H+-ATPase (V-ATPase) complex; diverged ortholog of human XMEA (X-linked Myopathy with Excessive Autophagy); functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)
Top 10 interactors (score): VOA1 (0.937); VPH1 (0.925); VMA6 (0.914); VMA11 (0.895); PKR1 (0.893); VMA3 (0.872); VPH2 (0.84); VMA7 (0.838); VMA16 (0.827); VMA22 (0.806); ATP1 (0.785); VMA8 (0.759); VMA5 (0.757); ATP2 (0.751); APS3 (0.683); VPS45 (0.637); VMA1 (0.627); VAM7 (0.621); RAV1 (0.596); VMA2 (0.561)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:682780-683013:+ | gene-YGR105W_AKU4011 | rna-NM_001181234.3_AKU4011 | cds-NP_011619.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:118639-118872:+ | gene-YGR105W_BG1 | rna-NM_001181234.3_BG1 | cds-NP_011619.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:684969-685202:+ | gene-YGR105W_Bruggeman | rna-NM_001181234.3_Bruggeman | cds-NP_011619.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:683159-683392:+ | gene-YGR105W_CAT1 | rna-NM_001181234.3_CAT1 | cds-NP_011619.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:683748-683981:+ | gene-YGR105W_CBS1585 | rna-NM_001181234.3_CBS1585 | cds-NP_011619.3_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:685402-685635:+ | gene-YGR105W_CBS436 | rna-NM_001181234.3_CBS436 | cds-NP_011619.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:675452-675685:+ | gene-YGR105W_CBS6412 | rna-NM_001181234.3_CBS6412 | cds-NP_011619.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:680385-680618:+ | gene-YGR105W_CBS6413 | rna-NM_001181234.3_CBS6413 | cds-NP_011619.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:698271-698504:+ | gene-YGR105W_CENPK1137D | rna-NM_001181234.3_CENPK1137D | cds-NP_011619.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:670370-670603:+ | gene-YGR105W_EthanolRed | rna-NM_001181234.3_EthanolRed | cds-NP_011619.3_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:674178-674411:+ | gene-YGR105W_FaliES1 | rna-NM_001181234.3_FaliES1 | cds-NP_011619.3_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000396.1:2144-2377:- | gene-YGR105W_JAY291 | rna-NM_001181234.3_JAY291 | cds-NP_011619.3_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:681958-682191:+ | gene-YGR105W_MUCL30387 | rna-NM_001181234.3_MUCL30387 | cds-NP_011619.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:684769-685002:+ | gene-YGR105W_MUCL30388 | rna-NM_001181234.3_MUCL30388 | cds-NP_011619.3_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:679479-679712:+ | gene-YGR105W_MUCL39482 | rna-NM_001181234.3_MUCL39482 | cds-NP_011619.3_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:689781-690014:+ | gene-YGR105W_MUCL42920 | rna-NM_001181234.3_MUCL42920 | cds-NP_011619.3_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:698599-698832:+ | gene-YGR105W_NCIM3186 | rna-NM_001181234.3_NCIM3186 | cds-NP_011619.3_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:674168-674401:+ | gene-YGR105W_NCYC1407 | rna-NM_001181234.3_NCYC1407 | cds-NP_011619.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:676849-677082:+ | gene-YGR105W_PE2H3 | rna-NM_001181234.3_PE2H3 | cds-NP_011619.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:681968-682201:+ | gene-YGR105W_PE2H4 | rna-NM_001181234.3_PE2H4 | cds-NP_011619.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:698599-698832:+ | gene-YGR105W_S288C | rna-NM_001181234.3_S288C | cds-NP_011619.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:125207-125440:+ | gene-YGR105W_SA1 | rna-NM_001181234.3_SA1 | cds-NP_011619.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:694547-694780:+ | gene-YGR105W_ThermosaccDry | rna-NM_001181234.3_ThermosaccDry | cds-NP_011619.3_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:791037-791270:+ | gene-YGR105W_VR1 | rna-NM_001181234.3_VR1 | cds-NP_011619.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:148795-149028:+ | gene-YGR105W_ZTW1 | rna-NM_001181234.3_ZTW1 | cds-NP_011619.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:684562-684795:+ | gene-YGR105W_Sparadoxus | rna-NM_001181234.3_Sparadoxus | cds-NP_011619.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |